BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0607100 Os06g0607100|AK071250
(307 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15820.1 | chr3:5351217-5353573 FORWARD LENGTH=302 239 2e-63
AT3G15830.1 | chr3:5354974-5356327 FORWARD LENGTH=297 221 3e-58
>AT3G15820.1 | chr3:5351217-5353573 FORWARD LENGTH=302
Length = 301
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/213 (56%), Positives = 143/213 (67%), Gaps = 5/213 (2%)
Query: 70 WRRP----EWCSAAGVAGVLRRHPXXXXFGCGLLLFMAVEYTIPMVPPAAPPVDLGFXXX 125
WR W +A + V+R H F GLL FM VEYT+ M+P + P DLGF
Sbjct: 67 WRSKASFTTW-TARDIVYVVRYHWIPCMFAAGLLFFMGVEYTLQMIPARSEPFDLGFVVT 125
Query: 126 XXXXXXXXXRPWLNSLLAALNTVFVAMQAAYILWAILGEGRPRAAVAAMMMFTCRGALGC 185
P LN++LAALNTVFV MQ YI+W L EGR RA +AA+ MFTCRG LG
Sbjct: 126 RSLNRVLASSPDLNTVLAALNTVFVGMQTTYIVWTWLVEGRARATIAALFMFTCRGILGY 185
Query: 186 ATQLPLPAEFLGSGMDFPVGNVSFFLFFSGHVAGAVIAAEDXXXXXXXXXXXLYDALNLL 245
+TQLPLP +FLGSG+DFPVGNVSFFLFFSGHVAG++IA+ D ++D LN+L
Sbjct: 186 STQLPLPQDFLGSGVDFPVGNVSFFLFFSGHVAGSMIASLDMRRMQRLRLAMVFDILNVL 245
Query: 246 QGVRLLACRGHYTIDLAVGVGAGLLFDMLAGRY 278
Q +RLL RGHYTIDLAVGVGAG+LFD LAG+Y
Sbjct: 246 QSIRLLGTRGHYTIDLAVGVGAGILFDSLAGKY 278
>AT3G15830.1 | chr3:5354974-5356327 FORWARD LENGTH=297
Length = 296
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 138/215 (64%), Gaps = 12/215 (5%)
Query: 74 EWCSAAG--------VAGVLRRHPXXXXFGCGLLLFMAVEYTIPMVPPAAPPVDLGFXXX 125
EW S A + V R H F G++ F VEYT M P ++ P DLGF
Sbjct: 61 EWTSKASFMTWTMHDIIYVARHHWIPCLFAAGVMFFTVVEYTFQMTPASSQPFDLGFVAT 120
Query: 126 XXXXXXXXXRPWLNSLLAALNTVFVAMQAAYI--LWAILGEGRPRAAVAAMMMFTCRGAL 183
P LN++LAALNT+ V MQ YI WA+ EGRPRA +AA+ MFTCRG L
Sbjct: 121 RYLHSILASSPNLNTVLAALNTILVGMQTTYIGCTWAV--EGRPRATIAALFMFTCRGIL 178
Query: 184 GCATQLPLPAEFLGSGMDFPVGNVSFFLFFSGHVAGAVIAAEDXXXXXXXXXXXLYDALN 243
G +TQLP P EFLGSG+D+PVGNVSFFLF+SGHVAG++IA+ D ++D LN
Sbjct: 179 GYSTQLPRPQEFLGSGVDYPVGNVSFFLFYSGHVAGSMIASLDMKRMQRFRLAMVFDILN 238
Query: 244 LLQGVRLLACRGHYTIDLAVGVGAGLLFDMLAGRY 278
+LQ +RLL RGHYTID+AVGVGAG+LFD LAG+Y
Sbjct: 239 VLQSIRLLGTRGHYTIDIAVGVGAGILFDSLAGKY 273
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,122,295
Number of extensions: 167009
Number of successful extensions: 391
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 209
Effective length of database: 8,419,801
Effective search space: 1759738409
Effective search space used: 1759738409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)