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Os06g0592500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene-responsive transcriptional coactivator.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.52 (0.0618) R2 : 0.747
β1 : 0.607 (0.236) R2dD : 0.00428 R2D : -0.0151
β2 : 6.55 (0.19) R2dC : 1.1 R2C : 0.384
β3 : -5.3 (0.294) R2dE : 0.311 R2E : -0.411
β4 : 5.1 (0.838) R2dD*C : 0.0429 R2D*C : -0.00593
β5 : -4.54 (1.12) R2dD*E : 0.0211 R2D*E : -0.0496
γ1 : 0.556 (0.134) R2dN8 : 0.0137 R2N8 : 0.0114
σ : 1.14
deviance : 590.03
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C
peak time of C : 9.77
E
wheather : temperature
threshold : 32.28
memory length : 8
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.95
open length of G : 16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
590.03 1.14 8.52 0.607 6.55 -5.3 5.1 -4.54 0.556 9.77 32.28 8 1.95 16
614.74 1.15 8.57 0.606 6.32 -4.77 3.1 -- 0.552 9.86 32.36 6 1.95 16
637.44 1.18 8.54 0.445 6.69 -5.22 -- 0.628 0.558 9.82 33.2 7 1.97 16
638.01 1.18 8.54 0.447 6.7 -5.26 -- -- 0.56 9.81 33.03 7 1.95 16
2140.14 2.17 8.68 1.02 -- -2.73 -- -3.7 0.665 -- 26.11 2 0.583 17.4
932.59 1.43 8.54 0.969 4.52 -- 4.01 -- 0.921 10.9 -- -- -- --
999.92 1.48 8.53 1.13 4.5 -- -- -- 0.932 10.8 -- -- -- --
2111.07 2.14 8.74 1.07 -- -2.42 -- -- 0.571 -- 26.63 2 0.0167 18.6
643.05 1.18 8.55 -- 6.67 -5.4 -- -- 0.489 9.81 32.7 7 1.95 16
2256.21 2.22 8.65 1.04 -- -- -- -- 0.903 -- -- -- -- --
1033.51 1.5 8.56 -- 4.49 -- -- -- 0.806 10.8 -- -- -- --
1745.68 1.95 8.86 -- -- -4.94 -- -- -0.0361 -- 29.27 5 2.89 23.1
2284.52 2.23 8.67 -- -- -- -- -- 0.788 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 636.01 temperature 30 10 < th dose dependent rect. 2 15
3 640.39 temperature 15 10 > th dose dependent rect. 6 19
32 658.56 temperature 20 10 > th dose dependent sin 4 NA
53 669.58 temperature 20 90 > th dose dependent rect. 5 6
55 670.23 radiation 10 30 < th dose dependent sin 4 NA
56 670.64 temperature 30 10 < th dose dependent sin 3 NA
93 680.88 temperature 20 10 > th dose dependent rect. 5 7
94 681.91 temperature 25 10 > th dose dependent sin 7 NA
102 683.34 temperature 20 10 > th dose dependent rect. 5 9
106 685.34 temperature 25 30 < th dose independent rect. 24 17
107 685.35 temperature 25 10 > th dose independent rect. 5 7
149 692.65 temperature 25 90 > th dose independent rect. 5 6
178 697.12 temperature 25 10 > th dose independent rect. 5 9
179 697.49 temperature 25 30 < th dose independent rect. 3 14
189 699.64 temperature 15 10 > th dose dependent rect. 6 16
192 700.04 temperature 25 30 > th dose independent sin 4 NA
232 704.86 radiation 10 90 < th dose dependent rect. 1 15
241 705.52 temperature 25 30 < th dose independent sin 4 NA
326 714.09 radiation 20 30 < th dose dependent rect. 7 23
349 716.31 radiation 1 90 > th dose independent sin 4 NA
388 720.66 radiation 1 90 < th dose independent sin 4 NA
447 725.21 temperature 25 270 > th dose independent rect. 5 3
461 725.99 radiation 10 90 < th dose dependent rect. 20 23
507 728.81 radiation 10 10 < th dose dependent rect. 10 23
559 732.55 radiation 10 10 < th dose dependent no NA NA
565 732.91 radiation 10 10 < th dose dependent rect. 13 23
587 734.06 radiation 10 30 < th dose dependent rect. 15 23
685 739.25 radiation 1 30 > th dose dependent sin 10 NA
696 739.81 temperature 25 10 > th dose independent rect. 5 11
781 743.39 radiation 10 30 < th dose dependent rect. 17 23
786 743.61 radiation 10 10 < th dose dependent rect. 21 23
791 743.90 radiation 1 90 > th dose independent rect. 5 6
804 744.10 radiation 1 90 < th dose independent rect. 1 16
906 748.70 temperature 30 30 < th dose independent rect. 11 19
947 750.90 temperature 25 10 > th dose dependent rect. 23 13
970 751.77 temperature 25 30 < th dose independent rect. 3 9
993 752.46 temperature 25 10 > th dose independent rect. 5 20