BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0592500 Os06g0592500|AK119729
(155 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24500.1 | chr3:8918755-8919201 FORWARD LENGTH=149 144 2e-35
AT3G58680.1 | chr3:21707367-21708625 FORWARD LENGTH=143 116 4e-27
AT2G42680.1 | chr2:17774972-17776116 FORWARD LENGTH=143 111 1e-25
>AT3G24500.1 | chr3:8918755-8919201 FORWARD LENGTH=149
Length = 148
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 1 MPTGRLSGNITQDWEPVVLRRTKPKAADLKSTRAVNQAMRTGAPVETVRXXXXXXXXXXX 60
MP+ R G +TQDWEPVVL ++K K+ DL+ +AVN A+R G V+TV+
Sbjct: 1 MPS-RYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGK 59
Query: 61 XXXX---XXRKLDESTEPAGLGRVGAEVRGAIQKARVAKGWSQAELAKRINERAQVVQEY 117
+KL+E TEPA + RV AEVR IQKAR+ K SQA+LAK+INER QVVQEY
Sbjct: 60 STAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEY 119
Query: 118 ESGKAVPVQAVLAKMERALEVKLR 141
E+GKAVP QAVLAKME+ L VKLR
Sbjct: 120 ENGKAVPNQAVLAKMEKVLGVKLR 143
>AT3G58680.1 | chr3:21707367-21708625 FORWARD LENGTH=143
Length = 142
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 8 GNITQDWEPVVLRRTKPKAADLKSTRAVNQAMRTGAPVETVRXXXXXXXXXXXX-XXXXX 66
G ITQDWEPVV+R+ P AA + + VN A R+GA +ETVR
Sbjct: 5 GPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNT 64
Query: 67 RKLDESTEPAGLGRVGAEVRGAIQKARVAKGWSQAELAKRINERAQVVQEYESGKAVPVQ 126
+KLD+ TE RV E++ AI +AR K +Q++LA INE+ QV+QEYESGKA+P Q
Sbjct: 65 KKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQ 124
Query: 127 AVLAKMERALEVKLR 141
+L+K+ERAL KLR
Sbjct: 125 QILSKLERALGAKLR 139
>AT2G42680.1 | chr2:17774972-17776116 FORWARD LENGTH=143
Length = 142
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 8 GNITQDWEPVVLRRTKPKAADLKSTRAVNQAMRTGAPVETVRXXXXXXXXXXXXXXXXXR 67
G ITQDWEPVV+R+ AA + + VN A R+GA +ETVR
Sbjct: 5 GPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNT 64
Query: 68 K-LDESTEPAGLGRVGAEVRGAIQKARVAKGWSQAELAKRINERAQVVQEYESGKAVPVQ 126
K LD+ TE RV E++ AI +AR K +Q++LA+ INE+ QV+QEYESGKA+P Q
Sbjct: 65 KMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQ 124
Query: 127 AVLAKMERALEVKLR 141
+L+K+ERAL KLR
Sbjct: 125 QILSKLERALGAKLR 139
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.127 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,099,807
Number of extensions: 55012
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 3
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)