Os06g0591600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hemoglobin Hb2.
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Os06g0591600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hemoglobin Hb2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.13 | 0.298 | 13.7 | -0.438 | 1.63 | 0.454 | 0.217 | 1.95 | 0.0925 | 5.1 | 29.49 | 1753 | -- | -- |
| 40.74 | 0.297 | 13.7 | -0.0332 | 1.61 | 0.663 | 0.219 | -- | 0.127 | 5.1 | 29.6 | 1752 | -- | -- |
| 40.25 | 0.295 | 13.7 | -0.439 | 1.63 | 0.453 | -- | 1.95 | 0.0925 | 5.09 | 29.47 | 1753 | -- | -- |
| 40.86 | 0.298 | 13.7 | -0.0121 | 1.62 | 0.675 | -- | -- | 0.136 | 5.09 | 29.67 | 1752 | -- | -- |
| 121 | 0.512 | 13.8 | -0.162 | -- | 0.729 | -- | 2.23 | 0.257 | -- | 28.18 | 436 | -- | -- |
| 56.43 | 0.352 | 13.7 | -0.194 | 1.67 | -- | 0.266 | -- | 0.153 | 5.18 | -- | -- | -- | -- |
| 56.61 | 0.352 | 13.7 | -0.194 | 1.67 | -- | -- | -- | 0.152 | 5.17 | -- | -- | -- | -- |
| 90.05 | 0.442 | 13.6 | 0.142 | -- | 1.54 | -- | -- | 0.403 | -- | 28.3 | 424 | -- | -- |
| 40.87 | 0.298 | 13.7 | -- | 1.62 | 0.677 | -- | -- | 0.137 | 5.09 | 29.68 | 1752 | -- | -- |
| 202.5 | 0.665 | 13.7 | -0.135 | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
| 57.6 | 0.355 | 13.7 | -- | 1.67 | -- | -- | -- | 0.173 | 5.17 | -- | -- | -- | -- |
| 90.53 | 0.443 | 13.6 | -- | -- | 1.54 | -- | -- | 0.375 | -- | 28.26 | 419 | -- | -- |
| 202.98 | 0.665 | 13.7 | -- | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 21 |
| 2 | 40.69 | radiation | 10.0 | 720 | > th | dose independent | rect. | 13 | 20 |
| 3 | 40.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 4 | 40.76 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 19 |
| 8 | 41.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 9 | 41.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 11 | 41.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 12 | 41.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 14 | 41.12 | radiation | 10.0 | 720 | > th | dose independent | sin | 13 | NA |
| 18 | 41.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 21 | 41.20 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 23 | 41.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 30 | 41.32 | radiation | 20.0 | 270 | < th | dose independent | sin | 13 | NA |
| 32 | 41.32 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 37 | 41.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 38 | 41.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 48 | 41.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 54 | 41.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 57 | 41.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 60 | 41.44 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 75 | 41.46 | temperature | 30.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 82 | 41.47 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 99 | 41.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 159 | 41.51 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 174 | 41.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 175 | 41.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 14 |
| 196 | 41.56 | temperature | 30.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 230 | 41.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 234 | 41.60 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 242 | 41.61 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 263 | 41.62 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 308 | 41.63 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 358 | 41.64 | radiation | 10.0 | 720 | > th | dose independent | rect. | 15 | 17 |
| 398 | 41.68 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 400 | 41.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 511 | 41.69 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 512 | 41.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 538 | 41.71 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 548 | 41.71 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 567 | 41.73 | radiation | 1.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 574 | 41.76 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 587 | 41.80 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 597 | 41.82 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 604 | 41.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 608 | 41.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 614 | 41.86 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 624 | 41.87 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 634 | 41.89 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 657 | 41.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 658 | 41.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 663 | 41.93 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 705 | 41.95 | radiation | 20.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 723 | 41.96 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 740 | 41.98 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 766 | 41.99 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 807 | 42.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 848 | 42.10 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 869 | 42.12 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 983 | 42.18 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 3 |