BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0591600 Os06g0591600|AK073898
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32690.1  | chr4:15765486-15766862 FORWARD LENGTH=176          252   6e-68

>AT4G32690.1 | chr4:15765486-15766862 FORWARD LENGTH=176
          Length = 175

 Score =  252 bits (644), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 137/176 (77%), Gaps = 6/176 (3%)

Query: 1   MQSLQDKASEWSGVAAGDAFAIDDGNVFEALGGTTQPFVDLSTNFYTRVYEDEEEWFRQI 60
           MQSLQDKAS  SGV   +AFAID+ N+F+ LG   Q F++LSTNFYTRVY+DEEEWF+ I
Sbjct: 1   MQSLQDKASVLSGVDQAEAFAIDESNLFDKLG--LQTFINLSTNFYTRVYDDEEEWFQSI 58

Query: 61  FAGSKKEDAIRNQYEFLVQRMGGPQLFSQRRGHPALIARHRPFPVTHQAAERWLHHMQQA 120
           F+ S KEDAI+NQYEF VQRMGGP L+SQR+GHPALI RHRPFPVTHQAAERWL HMQ A
Sbjct: 59  FSNSNKEDAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTHQAAERWLEHMQNA 118

Query: 121 VDTTDSIDAATKTKMMYFFRHTAYFLVAGNEMTRQG----HGTSCKCKHGESKPAE 172
           +D +  ID  +K KMM FFRHTA+FLVAGNE+  Q     H   C CKH  +KPAE
Sbjct: 119 LDDSVDIDQDSKIKMMKFFRHTAFFLVAGNELKNQNEKPKHKPQCACKHAANKPAE 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,942,388
Number of extensions: 151099
Number of successful extensions: 287
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)