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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0589500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.4 (0.1) R2 : 0.571
β1 : -10 (0.611) R2dD : 1.2 R2D : 0.264
β2 : 0.95 (0.196) R2dC : 0.0219 R2C : -0.0129
β3 : 2.69 (0.285) R2dE : 0.153 R2E : -0.138
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.8 (1.96) R2dD*E : 0.166 R2D*E : -0.561
γ1 : -0.911 (0.206) R2dN8 : 0.0376 R2N8 : -0.0769
σ : 1.46
deviance : 985.19
__
_____
C
peak time of C : 8.59
E
wheather : temperature
threshold : 24.94
memory length : 1423
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.7
open length of G : 1.21

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
983.41 1.47 6.4 -10.1 0.946 2.7 0.793 -12 -0.908 8.41 25.03 1425 15.7 1.2
1084.94 1.53 6.16 -7.34 1.36 1.92 0.125 -- -0.849 9.18 20.63 8215 16.5 1.95
985.19 1.46 6.4 -10 0.95 2.69 -- -11.8 -0.911 8.59 24.94 1423 15.7 1.21
1079.59 1.53 6.12 -7.1 1.29 1.98 -- -- -0.709 9.38 20.77 8165 16.9 1.07
1034.35 1.5 6.41 -9.95 -- 2.69 -- -11.9 -0.875 -- 25.02 1390 15.7 1.28
1174.4 1.61 6 -6.29 0.966 -- 0.893 -- -0.0664 8.21 -- -- -- --
1176.76 1.61 6 -6.27 0.962 -- -- -- -0.0659 8.36 -- -- -- --
1125.21 1.56 6.14 -6.96 -- 2.84 -- -- -0.644 -- 22.7 1472 16.1 0.897
2168.58 2.17 5.88 -- 0.994 1.17 -- -- 0.469 10.7 23.77 904 17.9 2.98
1228.16 1.64 6.02 -6.26 -- -- -- -- -0.0558 -- -- -- -- --
2211.52 2.2 5.84 -- 0.941 -- -- -- 0.632 8.85 -- -- -- --
2216.15 2.19 5.91 -- -- 0.952 -- -- 0.509 -- 23.9 1139 18 2.22
2261.92 2.22 5.87 -- -- -- -- -- 0.639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 937.38 wind 3 43200 > th dose dependent rect. 13 1
2 938.15 wind 5 43200 > th dose independent rect. 12 3
3 940.50 wind 5 43200 < th dose independent rect. 12 3
4 941.14 wind 5 43200 > th dose independent rect. 11 6
5 941.75 wind 5 43200 > th dose dependent rect. 13 4
7 942.51 wind 5 43200 > th dose dependent rect. 13 7
8 942.57 wind 5 43200 < th dose independent rect. 11 5
19 945.75 humidity 90 43200 > th dose independent rect. 4 3
23 946.13 humidity 90 43200 > th dose independent rect. 5 1
29 946.84 wind 5 43200 > th dose independent rect. 11 10
41 948.25 humidity 90 43200 > th dose independent rect. 2 8
49 949.12 humidity 90 43200 < th dose independent rect. 1 10
59 950.10 humidity 90 43200 < th dose independent rect. 2 8
75 952.00 humidity 90 43200 < th dose independent rect. 19 15
80 952.45 humidity 90 43200 < th dose independent sin 7 NA
82 952.46 wind 5 43200 > th dose independent rect. 11 14
83 952.51 humidity 90 43200 < th dose independent rect. 22 14
95 953.29 wind 7 43200 < th dose independent rect. 14 6
101 953.57 wind 5 43200 < th dose independent rect. 11 14
134 954.75 wind 5 43200 > th dose dependent rect. 13 12
162 956.58 wind 5 43200 > th dose independent sin 20 NA
168 956.91 wind 7 43200 > th dose independent rect. 14 7
182 957.36 wind 5 43200 < th dose independent sin 20 NA
198 957.97 humidity 90 43200 > th dose independent rect. 21 13
216 958.67 humidity 90 43200 > th dose independent sin 7 NA
243 959.51 humidity 90 43200 > th dose dependent rect. 4 2
258 960.15 humidity 80 43200 > th dose dependent rect. 2 11
259 960.21 humidity 90 43200 > th dose dependent rect. 3 4
304 961.39 wind 5 43200 > th dose dependent sin 19 NA
331 962.40 humidity 90 43200 > th dose dependent rect. 2 6
368 963.54 wind 9 43200 < th dose dependent rect. 11 4
408 964.60 humidity 90 43200 > th dose dependent rect. 21 13
478 965.90 humidity 90 43200 > th dose dependent sin 9 NA
633 968.74 wind 9 43200 < th dose dependent rect. 13 1
703 969.96 humidity 80 43200 > th dose dependent sin 4 NA
714 970.14 humidity 90 43200 > th dose dependent rect. 22 2
769 971.08 humidity 90 43200 < th dose independent rect. 19 7
828 971.99 radiation 40 43200 > th dose dependent rect. 9 1
830 972.05 humidity 90 43200 < th dose independent rect. 5 1
833 972.07 humidity 90 14400 < th dose independent rect. 2 1
840 972.16 radiation 40 43200 > th dose independent rect. 9 1
865 972.43 wind 7 43200 < th dose independent rect. 24 20
917 973.18 humidity 90 14400 > th dose independent rect. 1 3
959 973.63 humidity 90 43200 > th dose dependent rect. 20 6
961 973.66 radiation 30 14400 < th dose independent rect. 16 4
970 973.79 wind 7 43200 > th dose independent rect. 24 19
990 974.13 radiation 30 14400 < th dose independent rect. 16 8
999 974.22 radiation 30 14400 < th dose independent rect. 16 6