BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0589500 Os06g0589500|AK073322
         (346 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62550.1  | chr5:25105839-25107875 REVERSE LENGTH=488          128   4e-30

>AT5G62550.1 | chr5:25105839-25107875 REVERSE LENGTH=488
          Length = 487

 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 129/226 (57%), Gaps = 16/226 (7%)

Query: 5   SGDQSAGSAARA----SKLRYPLRSASRGKGAADAPPTSGSVARSFIPCRPKPSLDVSKS 60
           S ++S  SAA      SKLRYPLRSA R K     PP     A S +P R +    VS+S
Sbjct: 4   SMEKSVSSAASGNSINSKLRYPLRSALRSKEGK--PPVPDFSASS-MPRRARVVSAVSQS 60

Query: 61  VCGLDLSSVK--DNSAKPPRRHSIQTKPGVSPRPTPTGTITPVSLV-RSRRSD----SQG 113
              LDLS  K  D +  PPRR SI  KP  +       +        + +RS     S  
Sbjct: 61  TTVLDLSGKKSVDRTKLPPRRLSIPNKPTSNSSVKSVSSSVTSLSEVKPKRSRIVPRSFN 120

Query: 114 KFDTPIS-EVSMSTARRKFSTLSSTSYWMTQIRLAEAASKHSISLGFFKLALESECEPLD 172
           +  TP+S  +  S  R+K   LSS++YW+T I+LAE+ +KHSISLGFFKLAL + CEPLD
Sbjct: 121 ETTTPVSSNLRSSVTRKKVEDLSSSTYWLTHIKLAESVAKHSISLGFFKLALHAGCEPLD 180

Query: 173 RMRDELKAYVVRHGLATELEEPVKDILQVYNIVEDLEKLKITVNSS 218
           +M++ELK Y  R+ +   L + +K++ ++YNI E+  +++++  SS
Sbjct: 181 KMKEELKLYARRNNMDG-LADAMKELSELYNISEESNQVQVSETSS 225



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.124    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,996,688
Number of extensions: 289432
Number of successful extensions: 999
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 247
Effective length of database: 8,392,385
Effective search space: 2072919095
Effective search space used: 2072919095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 112 (47.8 bits)