Os06g0571800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GATA transcription factor 3 (AtGATA-3).
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Os06g0571800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GATA transcription factor 3 (AtGATA-3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.27 | 0.491 | 13.2 | 0.57 | 0.566 | -1.21 | -0.829 | -0.341 | -0.443 | 8 | 11.58 | 10 | -- | -- |
| 107.08 | 0.486 | 13.2 | 0.559 | 0.488 | -1.29 | -0.643 | -- | -0.431 | 7.56 | 11.58 | 10 | -- | -- |
| 108.01 | 0.488 | 13.2 | 0.546 | 0.548 | -1.19 | -- | 0.0259 | -0.427 | 8.44 | 11.58 | 10 | -- | -- |
| 108.01 | 0.487 | 13.2 | 0.546 | 0.549 | -1.19 | -- | -- | -0.427 | 8.44 | 11.58 | 10 | -- | -- |
| 118.35 | 0.509 | 13.2 | 0.556 | -- | -1.45 | -- | 0.0675 | -0.423 | -- | 11.58 | 10 | -- | -- |
| 132.49 | 0.54 | 13.2 | 0.56 | 1.72 | -- | -0.0594 | -- | -0.403 | 10.8 | -- | -- | -- | -- |
| 132.5 | 0.539 | 13.2 | 0.558 | 1.72 | -- | -- | -- | -0.403 | 10.8 | -- | -- | -- | -- |
| 118.38 | 0.509 | 13.2 | 0.554 | -- | -1.45 | -- | -- | -0.424 | -- | 11.58 | 10 | -- | -- |
| 115.86 | 0.504 | 13.2 | -- | 0.545 | -1.2 | -- | -- | -0.488 | 8.32 | 11.58 | 10 | -- | -- |
| 315.99 | 0.831 | 13.2 | 0.523 | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
| 140.7 | 0.555 | 13.2 | -- | 1.72 | -- | -- | -- | -0.465 | 10.8 | -- | -- | -- | -- |
| 126.48 | 0.525 | 13.3 | -- | -- | -1.45 | -- | -- | -0.485 | -- | 11.58 | 10 | -- | -- |
| 323.19 | 0.839 | 13.3 | -- | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.36 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 9 | 106.11 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 17 |
| 15 | 106.85 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 11 |
| 19 | 107.26 | radiation | 1.0 | 10 | > th | dose independent | sin | 1 | NA |
| 20 | 107.34 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 8 | 10 |
| 32 | 108.07 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 7 |
| 56 | 108.90 | radiation | 10.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 62 | 109.04 | radiation | 1.0 | 10 | < th | dose independent | sin | 1 | NA |
| 78 | 109.75 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 79 | 109.76 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 80 | 109.77 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 82 | 109.77 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 83 | 109.78 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 90 | 109.90 | radiation | 1.0 | 10 | < th | dose independent | rect. | 13 | 5 |
| 92 | 109.91 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 3 |
| 93 | 109.91 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 3 |
| 117 | 110.43 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 120 | 110.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 19 |
| 122 | 110.61 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 137 | 110.83 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 179 | 111.54 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 180 | 111.54 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 192 | 111.67 | radiation | 20.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 194 | 111.68 | radiation | 20.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 196 | 111.69 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 208 | 111.83 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 244 | 112.15 | humidity | 70.0 | 30 | > th | dose independent | rect. | 1 | 17 |
| 254 | 112.20 | radiation | 1.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 275 | 112.38 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 276 | 112.39 | humidity | 70.0 | 30 | > th | dose independent | rect. | 1 | 19 |
| 292 | 112.44 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 302 | 112.51 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 14 |
| 306 | 112.53 | radiation | 20.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 337 | 112.72 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 354 | 112.79 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 380 | 112.96 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 19 |
| 382 | 112.98 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 21 |
| 402 | 113.05 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 16 |
| 421 | 113.15 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 3 |
| 472 | 113.38 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 3 |
| 519 | 113.60 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 525 | 113.63 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 567 | 113.78 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 617 | 113.97 | humidity | 60.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 817 | 114.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 18 | 7 |
| 819 | 114.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 18 | 7 |
| 845 | 114.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 10 |
| 847 | 114.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 863 | 114.92 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 16 |
| 890 | 114.97 | radiation | 20.0 | 10 | < th | dose independent | rect. | 12 | 17 |
| 895 | 114.99 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 7 |
| 916 | 115.03 | temperature | 15.0 | 90 | > th | dose independent | rect. | 1 | 17 |