Os06g0567000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0197 family protein.
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Os06g0567000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0197 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.55 | 0.4 | 11.3 | -0.254 | 0.0725 | -1.11 | 0.059 | 3.76 | 0.0859 | 18.2 | 30.68 | 1542 | -- | -- |
| 77.63 | 0.41 | 11.2 | -0.0615 | 0.0923 | -1.59 | 0.00713 | -- | 0.196 | 17.5 | 21.51 | 9810 | -- | -- |
| 72.55 | 0.397 | 11.3 | -0.253 | 0.0719 | -1.11 | -- | 3.75 | 0.0845 | 18.6 | 30.56 | 1545 | -- | -- |
| 77.62 | 0.41 | 11.2 | -0.0686 | 0.0958 | -1.63 | -- | -- | 0.189 | 17.4 | 21.5 | 9823 | -- | -- |
| 72.7 | 0.397 | 11.3 | -0.267 | -- | -1.11 | -- | 3.73 | 0.0797 | -- | 30.6 | 1679 | -- | -- |
| 106.98 | 0.485 | 11.1 | 0.947 | 0.0636 | -- | 0.206 | -- | 0.543 | 17.8 | -- | -- | -- | -- |
| 107.06 | 0.485 | 11.1 | 0.945 | 0.0683 | -- | -- | -- | 0.544 | 19 | -- | -- | -- | -- |
| 77.52 | 0.41 | 11.2 | 0.163 | -- | -1.49 | -- | -- | 0.226 | -- | 21.57 | 4124 | -- | -- |
| 77.68 | 0.411 | 11.2 | -- | 0.0852 | -1.57 | -- | -- | 0.196 | 17.4 | 21.54 | 9820 | -- | -- |
| 107.3 | 0.484 | 11.1 | 0.944 | -- | -- | -- | -- | 0.543 | -- | -- | -- | -- | -- |
| 130.59 | 0.535 | 11.1 | -- | 0.0598 | -- | -- | -- | 0.439 | 20 | -- | -- | -- | -- |
| 77.86 | 0.411 | 11.2 | -- | -- | -1.73 | -- | -- | 0.179 | -- | 21.94 | 5244 | -- | -- |
| 130.78 | 0.534 | 11.1 | -- | -- | -- | -- | -- | 0.438 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 2 | 70.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 4 | 70.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 6 | 70.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 12 | 70.61 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 62 | 71.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 81 | 71.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 97 | 71.44 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 100 | 71.45 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 107 | 71.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 115 | 71.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 161 | 71.69 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 197 | 71.79 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 264 | 71.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 293 | 72.07 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 302 | 72.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 330 | 72.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 357 | 72.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 391 | 72.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 409 | 72.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 442 | 72.39 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 558 | 72.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 596 | 72.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 14 |
| 599 | 72.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 17 |
| 609 | 72.62 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 635 | 72.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 661 | 72.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 688 | 72.70 | radiation | 30 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 731 | 72.74 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 738 | 72.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 811 | 72.81 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 843 | 72.84 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 866 | 72.87 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 875 | 72.88 | radiation | 30 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 883 | 72.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 902 | 72.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 906 | 72.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 923 | 72.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 924 | 72.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 927 | 72.93 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 928 | 72.93 | humidity | 70 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 935 | 72.94 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 946 | 72.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 23 |