BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0567000 Os06g0567000|AK121337
         (76 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29735.2  | chr4:14562962-14564277 REVERSE LENGTH=99            66   4e-12

>AT4G29735.2 | chr4:14562962-14564277 REVERSE LENGTH=99
          Length = 98

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 22/79 (27%)

Query: 1  MAAKAISSPVPVDWYPTLAVVMVAVGLMFTASFF----------------------IYEA 38
          MAAK I+SP+PV  YPTL+V  +A+GL+ TA FF                      IYEA
Sbjct: 1  MAAKPIASPIPVALYPTLSVFTLAIGLVITAIFFIVEHLPFKGWQVLGDMIRFVKVIYEA 60

Query: 39 TSSRRNRSLAKEIATATIA 57
          TSSR+NRS+ KE+AT+ +A
Sbjct: 61 TSSRKNRSVGKELATSAVA 79



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 884,346
Number of extensions: 19244
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 76
Length of database: 11,106,569
Length adjustment: 48
Effective length of query: 28
Effective length of database: 9,790,601
Effective search space: 274136828
Effective search space used: 274136828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)