Os06g0562700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0562700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.14 | 0.439 | 6.14 | 2.07 | 0.621 | -1.58 | 0.499 | 3.67 | 0.213 | 0.671 | 25.29 | 1213 | -- | -- |
| 90.65 | 0.443 | 6.22 | 1.2 | 0.682 | -1.36 | 0.7 | -- | 0.116 | 0.168 | 22.7 | 1045 | -- | -- |
| 88.14 | 0.437 | 6.13 | 2.11 | 0.624 | -1.61 | -- | 3.96 | 0.224 | 0.628 | 25.27 | 1199 | -- | -- |
| 92.73 | 0.449 | 6.22 | 1.18 | 0.68 | -1.34 | -- | -- | 0.121 | 0.22 | 22.56 | 1054 | -- | -- |
| 101.57 | 0.469 | 6.12 | 2.19 | -- | -1.53 | -- | 4.1 | 0.223 | -- | 25.58 | 1591 | -- | -- |
| 143.04 | 0.561 | 6.28 | 0.789 | 0.381 | -- | 0.449 | -- | -0.13 | 0.466 | -- | -- | -- | -- |
| 143.88 | 0.562 | 6.28 | 0.771 | 0.381 | -- | -- | -- | -0.133 | 0.678 | -- | -- | -- | -- |
| 105.33 | 0.478 | 6.21 | 1.23 | -- | -1.21 | -- | -- | 0.152 | -- | 21.2 | 1629 | -- | -- |
| 124.77 | 0.52 | 6.3 | -- | 0.584 | -0.953 | -- | -- | -0.217 | 0.614 | 26.3 | 1141 | -- | -- |
| 152.98 | 0.578 | 6.27 | 0.785 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 159.56 | 0.591 | 6.3 | -- | 0.393 | -- | -- | -- | -0.219 | 0.771 | -- | -- | -- | -- |
| 135.72 | 0.544 | 6.25 | -- | -- | -1.15 | -- | -- | -0.0551 | -- | 21.2 | 1629 | -- | -- |
| 169.23 | 0.607 | 6.29 | -- | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 33 | 87.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 45 | 87.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 54 | 87.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 71 | 87.42 | temperature | 20 | 1440 | > th | dose dependent | sin | 22 | NA |
| 84 | 87.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 106 | 87.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 187 | 87.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 211 | 87.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 306 | 88.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 21 |
| 404 | 88.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 530 | 88.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 539 | 88.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 576 | 88.93 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 710 | 89.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 745 | 89.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 804 | 89.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 812 | 89.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 874 | 89.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 23 |