BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0562700 Os06g0562700|AK109753
         (431 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03150.1  | chr2:952313-959004 FORWARD LENGTH=1341              67   2e-11

>AT2G03150.1 | chr2:952313-959004 FORWARD LENGTH=1341
          Length = 1340

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 90/213 (42%), Gaps = 22/213 (10%)

Query: 113 GYGQKLDQYGSDYT-----LERRMYGDHSANXXXXXXXXXXXXXYPEHVSGGHQ------ 161
           GYGQK D   SD       ++RR YG+ S++             Y +  +   Q      
Sbjct: 137 GYGQKTDDLYSDKLSGYIPVDRRQYGEQSSSYLGRELQNEPTRRYADPSNFARQTDLYDR 196

Query: 162 ---GSSMRHPQLLKPQLQSGSDI-----RQADYFAGRSAPIHQGSQDIGAYG-RVEADHR 212
               S +R  QLLK Q    S +     RQ DY   RS+ +    Q+   YG R+E+D  
Sbjct: 197 IDQASLLRGEQLLKMQSLHTSSVDAGVNRQTDYLTERSSTVRHSDQEAMHYGGRLESDPH 256

Query: 213 NLSILGTAPYGGQQSASLLGGAPRTNIDXXXXXXXXXXXXXXXXXXXXRDYASGKGLLHP 272
            LS+  T+ Y  Q + SLLG  PR N+D                    RDY +GKG+   
Sbjct: 257 GLSVRNTSSYASQHTPSLLGAVPRRNLDDYIYPESSSNPGYGVSLPPGRDYGTGKGIHSA 316

Query: 273 SS-DSDYRDSILSRVHPGISMVDE-RAVDRVGY 303
           +S D DY   +L+R       VD+ R  DR  Y
Sbjct: 317 ASLDLDYPGGMLARGTGAAPRVDDLRKGDRASY 349



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,648,387
Number of extensions: 181988
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 330
Effective length of database: 8,337,553
Effective search space: 2751392490
Effective search space used: 2751392490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)