Os06g0555500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Initiator tRNA phosphoribosyl transferase family protein.
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Os06g0555500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Initiator tRNA phosphoribosyl transferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.76 | 0.307 | 8.59 | 0.563 | 0.857 | 0.643 | -0.327 | -0.448 | 0.295 | 1.43 | 71.04 | 1263 | -- | -- |
| 43.16 | 0.306 | 8.59 | 0.508 | 0.866 | 0.615 | -0.256 | -- | 0.272 | 1.36 | 71 | 1252 | -- | -- |
| 43.17 | 0.306 | 8.59 | 0.559 | 0.858 | 0.644 | -- | -0.351 | 0.293 | 1.43 | 71.22 | 1263 | -- | -- |
| 43.43 | 0.307 | 8.59 | 0.503 | 0.861 | 0.623 | -- | -- | 0.276 | 1.41 | 71 | 1259 | -- | -- |
| 65.63 | 0.379 | 8.61 | 0.439 | -- | 0.508 | -- | -0.43 | 0.161 | -- | 71.22 | 1263 | -- | -- |
| 56.64 | 0.353 | 8.61 | 0.364 | 0.735 | -- | -0.383 | -- | 0.181 | 1.45 | -- | -- | -- | -- |
| 57.23 | 0.354 | 8.61 | 0.377 | 0.735 | -- | -- | -- | 0.184 | 1.44 | -- | -- | -- | -- |
| 64.62 | 0.376 | 8.6 | 0.448 | -- | 0.509 | -- | -- | 0.193 | -- | 72 | 1610 | -- | -- |
| 50 | 0.329 | 8.6 | -- | 0.875 | 0.566 | -- | -- | 0.225 | 1.51 | 72 | 1270 | -- | -- |
| 90.42 | 0.444 | 8.6 | 0.406 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 60.97 | 0.365 | 8.62 | -- | 0.742 | -- | -- | -- | 0.142 | 1.46 | -- | -- | -- | -- |
| 69.9 | 0.391 | 8.62 | -- | -- | 0.499 | -- | -- | 0.144 | -- | 72 | 1610 | -- | -- |
| 94.76 | 0.454 | 8.61 | -- | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.51 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 2 | 43.52 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 43.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 8 | 43.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 17 | 44.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 23 | 44.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 39 | 44.31 | humidity | 80 | 1440 | < th | dose dependent | sin | 0 | NA |
| 93 | 44.50 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 106 | 44.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 205 | 44.66 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 213 | 44.66 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 303 | 44.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 309 | 44.82 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 312 | 44.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 322 | 44.84 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 346 | 44.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 349 | 44.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 361 | 44.89 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 362 | 44.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 411 | 44.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 419 | 44.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 446 | 44.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 455 | 44.94 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 497 | 45.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 522 | 45.03 | humidity | 50 | 1440 | > th | dose dependent | sin | 0 | NA |
| 568 | 45.11 | humidity | 70 | 1440 | > th | dose independent | sin | 20 | NA |
| 569 | 45.11 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 571 | 45.11 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 587 | 45.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 591 | 45.14 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 593 | 45.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 594 | 45.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 598 | 45.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 612 | 45.17 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 614 | 45.17 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 617 | 45.17 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 712 | 45.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 725 | 45.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 827 | 45.31 | humidity | 70 | 1440 | < th | dose independent | sin | 19 | NA |
| 879 | 45.40 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 5 |
| 886 | 45.41 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 949 | 45.47 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 997 | 45.52 | humidity | 70 | 1440 | > th | dose independent | sin | 11 | NA |