BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0555500 Os06g0555500|AK106546
(544 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40570.1 | chr2:16941066-16943288 FORWARD LENGTH=522 580 e-166
>AT2G40570.1 | chr2:16941066-16943288 FORWARD LENGTH=522
Length = 521
Score = 580 bits (1495), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/521 (56%), Positives = 375/521 (71%), Gaps = 20/521 (3%)
Query: 22 SIYKAARRIKRRESTLYNALRSXXXXXXXXXXXXXLWPALPLVANLRCGLWYLPPRAVAA 81
SIY+AAR IKRR+++LYNALRS LWP LPLVANLRCGLWY A
Sbjct: 15 SIYRAARNIKRRDNSLYNALRSIYQDSIFVHEISLLWPKLPLVANLRCGLWY--SEKFDA 72
Query: 82 TCYFKSTDGHAGNWAFSTARLNLHLALLAGERGGCIIVDSTRRGKRFPDSMSKTIPIWCC 141
TCYFKSTDGH N +F+T+RLNLHL LLAGE+GGCII+DSTR+GKRFPDSMSKTIP+W C
Sbjct: 73 TCYFKSTDGHTNNLSFNTSRLNLHLPLLAGEKGGCIIIDSTRKGKRFPDSMSKTIPMWSC 132
Query: 142 VLNRAI-ERYRLQTNNKSAAVANKDAEKISES-SNWDNSVHLPVWVLETEKNAIEGRIEE 199
V+NR+I + N + ++ D + I + WD S+HLP+WV TE+ +IE R++E
Sbjct: 133 VVNRSIFNHWNRLCNIDAGLTSDDDGDNIRKLLDKWDCSLHLPLWVSNTERASIEARLDE 192
Query: 200 WTTQFESCGADIRSLALSLKKPLRPLWISQRTRIWLNEVPELESWDFTPIILVSASASGA 259
WT + + GADI SLA L+KPLRPLW+SQ+T IWLNEVPE +SWDFTP+ILVSASASG
Sbjct: 193 WTRELDESGADIASLASCLRKPLRPLWVSQKTVIWLNEVPEHDSWDFTPLILVSASASGE 252
Query: 260 VATQRMTSEFSWHYIPGAGDDEESWARGLTPTLFWKHSYDLLDGGPDLCNQLVADIVEKD 319
+ R +SEFSW+YIPGAGDDEESWARGL+P +FW H DL+ GPDLCNQ VA+IVE D
Sbjct: 253 L-QNRTSSEFSWNYIPGAGDDEESWARGLSPNVFWTHVDDLIHSGPDLCNQKVAEIVEND 311
Query: 320 RVYRAQRGEYSPQITAKPLKCSSHDGPFSNGDHTSIVQPMDSDPPTVTAMDKQNSSDGHI 379
RVYRA RG+ +PQ+ +KCS +G ++ I+ + + P V + +
Sbjct: 312 RVYRAHRGQEAPQVV---VKCSKSNGGVNHAKSDEIL-CLSAQIPKV--------DEERL 359
Query: 380 LFWIGTSNLAVASTLQVGDSLAEVDCILNCDSTS-NLPLTSSENSYLELPMVGSKDDRFS 438
+FW+ ++NLAV ++ QV +DCILNCD ++P++ E +L LPM GSK DRFS
Sbjct: 360 VFWLSSTNLAVGAS-QVACKETSIDCILNCDQNPISVPVSYLE-EHLHLPMKGSKFDRFS 417
Query: 439 LMKNLPKAVSFANRNLIAGKKLLICCQNGEDISICVALAIITRLFDCDGFFDHGNSFLKG 498
+ +NLP AV+FA + +GKK+L+CCQ+GEDISICV LAI+ LF+ +G FD G SF +
Sbjct: 418 ISRNLPPAVNFAKLKMSSGKKVLVCCQDGEDISICVCLAILMSLFNEEGAFDGGKSFEEK 477
Query: 499 DVTKLEMRKRLVFVCKYAVNARPSRGNLKQVYGFLCSEKEQ 539
+TK++MR+ L+F+CKYAVNARPSRGNLKQV+GFL S +E
Sbjct: 478 SITKMDMRRMLIFICKYAVNARPSRGNLKQVFGFLSSHREN 518
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,885,954
Number of extensions: 502108
Number of successful extensions: 1066
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 441
Effective length of database: 8,282,721
Effective search space: 3652679961
Effective search space used: 3652679961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)