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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0552900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SP3D.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0463) R2 : 0.283
β1 : -1.45 (0.17) R2dD : 0.119 R2D : 0.108
β2 : -- (--) R2dC : -- R2C : --
β3 : 9.13 (0.873) R2dE : 0.172 R2E : 0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0995 (0.099) R2dN8 : 0.00213 R2N8 : -0.00284
σ : 0.867
deviance : 346.52
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.3502
memory length : 11
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.74
open length of G : 0.11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
344.49 0.872 3.71 -2.15 0.107 24.8 -0.381 -154 -0.0931 15.9 0.895 10 7.01 0.984
383.16 0.912 3.51 -1.67 0.246 14.1 0.367 -- -0.0426 3.04 0.1113 11 7.74 0.781
344.92 0.865 3.71 -2.15 0.107 24.8 -- -154 -0.0931 15.9 0.895 10 7.01 0.984
346.07 0.866 3.62 -1.45 0.0897 9.12 -- -- -0.104 15 0.2103 11 7.73 0.1
345.52 0.866 3.71 -2.15 -- 24.8 -- -154 -0.0931 -- 0.895 10 7.01 0.984
428.69 0.971 3.63 -1.41 0.071 -- -0.419 -- -0.118 15 -- -- -- --
429.26 0.97 3.63 -1.42 0.07 -- -- -- -0.121 14 -- -- -- --
346.52 0.867 3.62 -1.45 -- 9.13 -- -- -0.0995 -- 0.3502 11 7.74 0.11
401.17 0.933 3.59 -- 0.148 9.21 -- -- 0.0672 16.1 0.5 18 7.19 0.824
429.55 0.968 3.63 -1.43 -- -- -- -- -0.122 -- -- -- -- --
482.56 1.03 3.59 -- 0.097 -- -- -- 0.0379 14.3 -- -- -- --
400.49 0.932 3.59 -- -- 9.13 -- -- 0.0607 -- 1.069 12 7.73 0.15
483.12 1.03 3.59 -- -- -- -- -- 0.036 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 344.71 wind 1.0 10 < th dose dependent rect. 7 1
2 347.01 wind 1.0 10 < th dose independent rect. 7 1
7 353.42 wind 1.0 90 < th dose dependent rect. 7 9
12 354.81 humidity 80.0 43200 > th dose independent rect. 11 2
14 355.05 precipitation 0.1 43200 > th dose independent rect. 8 2
15 355.05 precipitation 0.1 43200 > th dose dependent rect. 8 2
16 355.21 radiation 1.0 4320 < th dose dependent rect. 17 13
18 355.37 wind 1.0 90 < th dose dependent rect. 7 6
27 356.35 radiation 1.0 4320 < th dose dependent rect. 17 8
29 356.38 radiation 1.0 4320 < th dose dependent rect. 17 11
30 356.39 humidity 80.0 43200 < th dose independent rect. 12 2
32 356.42 precipitation 0.1 43200 < th dose independent rect. 8 2
33 356.42 precipitation 0.1 43200 < th dose dependent rect. 8 2
34 356.49 radiation 1.0 4320 < th dose dependent rect. 17 2
35 356.50 radiation 1.0 4320 < th dose dependent rect. 17 6
49 356.88 wind 9.0 43200 > th dose dependent rect. 18 2
63 358.43 radiation 20.0 14400 > th dose dependent rect. 6 1
80 358.91 radiation 1.0 4320 > th dose independent rect. 17 2
90 359.00 radiation 1.0 4320 < th dose dependent sin 13 NA
93 359.31 radiation 1.0 14400 < th dose dependent rect. 5 1
109 359.82 radiation 20.0 14400 > th dose independent rect. 17 14
111 360.00 radiation 20.0 14400 > th dose independent rect. 6 1
125 360.01 wind 9.0 43200 > th dose independent rect. 18 1
128 360.16 radiation 1.0 4320 > th dose independent rect. 17 13
131 360.25 wind 1.0 30 < th dose dependent rect. 6 17
140 360.63 radiation 1.0 43200 < th dose independent rect. 18 7
143 360.65 radiation 1.0 43200 < th dose independent rect. 18 10
146 360.69 radiation 1.0 43200 < th dose independent rect. 18 1
148 360.71 radiation 1.0 43200 < th dose independent rect. 18 4
153 360.72 radiation 1.0 4320 > th dose independent rect. 16 15
154 360.73 humidity 90.0 43200 < th dose independent rect. 9 2
168 360.98 radiation 1.0 14400 < th dose dependent rect. 3 3
174 360.99 radiation 1.0 14400 < th dose dependent rect. 24 6
177 361.00 radiation 1.0 14400 < th dose dependent rect. 21 9
186 361.15 wind 5.0 43200 > th dose dependent rect. 11 1
192 361.25 humidity 80.0 43200 > th dose dependent rect. 10 1
199 361.41 wind 9.0 43200 < th dose independent rect. 18 1
211 361.61 radiation 1.0 4320 < th dose independent rect. 17 13
217 361.70 radiation 1.0 4320 < th dose independent rect. 16 15
234 361.90 radiation 1.0 4320 < th dose dependent rect. 11 20
250 362.14 radiation 1.0 4320 < th dose independent rect. 17 8
253 362.17 radiation 1.0 4320 < th dose independent rect. 17 11
256 362.22 radiation 1.0 43200 < th dose dependent rect. 18 1
258 362.23 radiation 1.0 43200 < th dose dependent rect. 18 4
261 362.25 radiation 1.0 4320 < th dose independent rect. 17 2
268 362.29 radiation 1.0 4320 < th dose independent rect. 17 5
285 362.57 humidity 90.0 43200 > th dose dependent rect. 8 1
288 362.66 temperature 25.0 43200 > th dose independent rect. 10 2
289 362.72 temperature 20.0 43200 < th dose independent rect. 1 1
302 362.87 temperature 20.0 43200 > th dose independent rect. 1 1
304 362.88 humidity 80.0 43200 > th dose dependent rect. 10 5
308 362.95 radiation 1.0 43200 < th dose dependent rect. 7 22
327 363.06 temperature 20.0 43200 < th dose independent rect. 5 1
334 363.10 radiation 1.0 43200 < th dose dependent rect. 18 20
336 363.13 radiation 1.0 4320 > th dose independent sin 13 NA
339 363.15 temperature 25.0 43200 < th dose independent rect. 10 2
358 363.35 temperature 20.0 43200 > th dose independent rect. 5 1
359 363.35 radiation 1.0 43200 < th dose dependent rect. 7 12
364 363.37 radiation 1.0 43200 < th dose dependent rect. 12 17
366 363.39 radiation 40.0 43200 < th dose independent rect. 16 15
373 363.48 temperature 20.0 43200 < th dose independent rect. 23 7
408 363.66 temperature 20.0 43200 > th dose independent rect. 23 7
454 363.86 radiation 1.0 4320 < th dose dependent rect. 16 20
459 363.90 radiation 1.0 43200 < th dose dependent rect. 12 7
461 363.91 radiation 1.0 43200 < th dose dependent rect. 12 11
465 363.92 humidity 90.0 43200 > th dose dependent rect. 3 11
475 363.98 radiation 1.0 43200 < th dose dependent sin 19 NA
485 364.02 atmosphere 995.0 43200 < th dose dependent rect. 18 5
502 364.09 wind 1.0 43200 > th dose independent rect. 23 2
538 364.25 radiation 1.0 4320 < th dose independent sin 13 NA
575 364.44 atmosphere 995.0 43200 > th dose independent rect. 20 2
590 364.50 radiation 1.0 43200 < th dose dependent rect. 12 21
614 364.58 radiation 1.0 43200 > th dose independent rect. 13 1
618 364.59 atmosphere 995.0 43200 < th dose independent rect. 21 1
631 364.59 atmosphere 995.0 43200 < th dose dependent rect. 21 1
643 364.60 radiation 1.0 43200 < th dose independent rect. 13 1
644 364.60 radiation 1.0 43200 < th dose dependent rect. 13 1
651 364.62 atmosphere 995.0 43200 > th dose independent rect. 23 1
696 364.76 humidity 80.0 43200 > th dose dependent rect. 12 1
699 364.77 radiation 1.0 43200 < th dose dependent rect. 4 15
705 364.77 radiation 1.0 43200 < th dose dependent rect. 4 19
720 364.79 wind 3.0 14400 < th dose dependent rect. 20 2
765 364.86 radiation 1.0 43200 < th dose dependent no NA NA
815 365.08 wind 1.0 43200 > th dose independent rect. 21 1
819 365.09 wind 7.0 43200 < th dose independent rect. 10 3
824 365.11 humidity 90.0 43200 > th dose dependent rect. 3 19
885 365.29 temperature 25.0 43200 > th dose independent rect. 10 8
902 365.36 radiation 1.0 43200 > th dose independent rect. 18 1
915 365.38 temperature 25.0 4320 < th dose independent rect. 17 1
919 365.39 temperature 25.0 43200 < th dose independent rect. 10 8
931 365.44 atmosphere 995.0 43200 > th dose independent rect. 18 20
951 365.47 wind 5.0 43200 > th dose independent rect. 11 1
978 365.53 temperature 25.0 4320 > th dose independent rect. 17 1
980 365.53 atmosphere 995.0 43200 < th dose independent rect. 18 19
997 365.60 radiation 1.0 43200 < th dose independent rect. 7 18