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Os06g0546400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.58 (0.0258) R2 : 0.77
β1 : 1.77 (0.0932) R2dD : 0.19 R2D : 0.124
β2 : 1.7 (0.0754) R2dC : 0.337 R2C : 0.465
β3 : -1.4 (0.119) R2dE : 0.0978 R2E : 0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.683 (0.0562) R2dN8 : 0.106 R2N8 : -0.0177
σ : 0.476
deviance : 104.27
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_____
C
peak time of C : 18.4
E
wheather : atmosphere
threshold : 1006
memory length : 156
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.92
open length of G : 3.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.33 0.475 8.58 1.82 1.69 -1.37 0.823 1.42 0.701 18.4 1006 150 4.84 3.18
103.98 0.475 8.58 1.78 1.69 -1.4 0.399 -- 0.684 18.4 1006 156 4.84 3.18
103.53 0.474 8.58 1.79 1.72 -1.37 -- 0.888 0.69 18.4 1006 151 4.92 3.1
104.27 0.476 8.58 1.77 1.7 -1.4 -- -- 0.683 18.4 1006 156 4.92 3.08
185.36 0.634 8.48 1.88 -- -2.05 -- 1.39 0.841 -- 1004 298 3.05 3.57
135.57 0.546 8.63 1.73 2.13 -- 0.305 -- 0.504 18.6 -- -- -- --
135.81 0.546 8.63 1.72 2.13 -- -- -- 0.505 18.6 -- -- -- --
168.59 0.605 8.53 1.74 -- -2.28 -- -- 0.7 -- 1004 348 2.22 4.87
186.67 0.636 8.62 -- 1.69 -1.41 -- -- 0.501 18.4 1006 155 5.02 2.98
372.57 0.902 8.59 1.67 -- -- -- -- 0.462 -- -- -- -- --
214.23 0.685 8.68 -- 2.11 -- -- -- 0.313 18.6 -- -- -- --
227.31 0.702 8.66 -- -- -2.11 -- -- 0.412 -- 986.3 283 2.37 6.08
446.43 0.986 8.63 -- -- -- -- -- 0.276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.22 temperature 30.0 270 < th dose dependent rect. 3 6
2 107.57 temperature 30.0 90 < th dose dependent rect. 5 6
3 107.77 atmosphere 1005.0 90 > th dose dependent rect. 5 3
9 109.16 atmosphere 1005.0 90 > th dose independent rect. 5 3
11 109.19 wind 7.0 90 < th dose independent rect. 9 20
14 109.48 humidity 90.0 10 < th dose independent rect. 5 4
16 109.65 temperature 30.0 90 < th dose dependent rect. 5 8
20 109.98 radiation 1.0 90 > th dose independent sin 9 NA
21 109.98 temperature 10.0 90 > th dose dependent rect. 9 20
23 110.08 atmosphere 1000.0 270 > th dose dependent rect. 3 5
24 110.10 radiation 1.0 90 < th dose dependent sin 9 NA
25 110.10 temperature 30.0 90 < th dose dependent rect. 5 16
27 110.13 atmosphere 1005.0 10 > th dose dependent rect. 5 4
34 110.49 temperature 10.0 270 > th dose dependent rect. 7 8
37 110.60 radiation 1.0 90 < th dose independent sin 9 NA
40 110.74 wind 7.0 270 < th dose independent rect. 7 21
41 110.75 atmosphere 1005.0 270 > th dose independent rect. 5 1
45 110.82 temperature 30.0 90 < th dose dependent rect. 5 14
50 110.95 temperature 10.0 270 > th dose dependent rect. 23 14
52 110.98 wind 7.0 270 < th dose independent rect. 9 18
56 111.07 temperature 30.0 90 < th dose dependent rect. 5 10
57 111.07 temperature 30.0 270 < th dose dependent rect. 3 16
59 111.18 radiation 1.0 90 > th dose independent rect. 18 14
61 111.19 radiation 40.0 270 < th dose dependent rect. 3 7
72 111.35 radiation 1.0 90 > th dose independent rect. 4 4
96 111.46 temperature 10.0 10 > th dose dependent rect. 9 20
101 111.53 atmosphere 1005.0 10 > th dose independent rect. 6 3
105 111.60 temperature 30.0 90 < th dose independent rect. 5 4
107 111.62 radiation 20.0 270 < th dose independent rect. 3 6
118 111.80 humidity 60.0 90 > th dose dependent rect. 23 6
123 111.88 wind 9.0 10 < th dose independent rect. 9 21
126 111.93 wind 5.0 90 < th dose independent rect. 5 4
128 111.95 precipitation 0.1 90 < th dose independent rect. 9 20
130 111.95 precipitation 0.1 90 < th dose dependent rect. 9 20
135 112.02 atmosphere 1000.0 90 > th dose independent rect. 23 6
138 112.08 humidity 90.0 90 < th dose dependent rect. 6 1
143 112.16 temperature 30.0 90 < th dose dependent rect. 5 12
144 112.17 wind 1.0 270 > th dose independent rect. 3 5
146 112.19 wind 1.0 90 > th dose independent rect. 5 4
148 112.22 humidity 60.0 90 > th dose independent rect. 5 4
149 112.23 precipitation 0.1 90 < th dose independent rect. 5 4
150 112.23 precipitation 0.1 90 < th dose dependent rect. 5 4
152 112.24 radiation 1.0 90 < th dose independent rect. 23 7
158 112.32 temperature 10.0 90 > th dose independent rect. 5 4
161 112.32 atmosphere 995.0 90 > th dose independent rect. 5 4
162 112.32 atmosphere 1015.0 90 < th dose independent rect. 5 4
163 112.32 temperature 10.0 90 > th dose independent rect. 9 20
169 112.46 radiation 1.0 90 < th dose dependent rect. 23 7
170 112.47 temperature 30.0 10 < th dose dependent rect. 6 3
175 112.52 radiation 30.0 90 < th dose independent rect. 5 4
180 112.55 wind 9.0 270 < th dose independent rect. 6 23
188 112.67 wind 9.0 90 < th dose dependent rect. 9 20
194 112.75 radiation 1.0 90 > th dose dependent rect. 18 13
202 112.86 radiation 1.0 90 > th dose dependent rect. 4 3
216 112.93 wind 9.0 270 < th dose dependent rect. 7 21
242 113.21 wind 7.0 270 < th dose independent rect. 8 9
246 113.24 atmosphere 1015.0 90 < th dose independent rect. 5 18
268 113.46 radiation 1.0 90 < th dose dependent rect. 23 17
276 113.52 temperature 30.0 90 < th dose dependent rect. 6 1
290 113.55 radiation 30.0 90 < th dose independent rect. 5 6
292 113.56 wind 9.0 90 < th dose dependent rect. 5 4
293 113.56 temperature 30.0 10 < th dose dependent rect. 6 6
326 113.69 temperature 30.0 90 < th dose independent rect. 5 18
328 113.69 radiation 1.0 90 < th dose dependent rect. 23 11
341 113.78 humidity 70.0 270 > th dose dependent rect. 23 3
355 113.84 wind 5.0 10 < th dose independent rect. 6 3
358 113.84 temperature 10.0 10 > th dose independent rect. 6 3
360 113.84 temperature 30.0 10 < th dose independent rect. 6 3
361 113.84 humidity 50.0 10 > th dose independent rect. 6 3
363 113.84 atmosphere 995.0 10 > th dose independent rect. 6 3
364 113.84 atmosphere 1015.0 10 < th dose independent rect. 6 3
365 113.84 temperature 10.0 10 > th dose independent rect. 9 21
366 113.84 radiation 1.0 90 < th dose dependent rect. 23 14
367 113.85 radiation 40.0 90 < th dose independent rect. 5 18
384 113.89 temperature 30.0 270 < th dose independent rect. 3 6
385 113.89 humidity 70.0 90 > th dose independent rect. 5 6
388 113.90 precipitation 0.1 10 < th dose independent rect. 6 3
391 113.90 precipitation 0.1 10 < th dose dependent rect. 6 3
392 113.91 temperature 10.0 90 > th dose independent rect. 23 6
393 113.91 temperature 30.0 90 < th dose independent rect. 23 6
394 113.91 humidity 50.0 90 > th dose independent rect. 23 6
401 113.91 temperature 10.0 90 > th dose independent rect. 5 18
402 113.91 precipitation 0.1 270 < th dose independent rect. 9 18
404 113.91 precipitation 0.1 270 < th dose dependent rect. 9 18
406 113.92 wind 9.0 90 < th dose independent rect. 23 6
419 114.02 atmosphere 1015.0 270 < th dose independent rect. 3 19
425 114.05 radiation 1.0 90 < th dose independent rect. 23 16
465 114.15 radiation 1.0 90 < th dose independent rect. 23 11
481 114.23 atmosphere 1000.0 270 > th dose independent rect. 23 3
485 114.26 precipitation 0.1 270 < th dose independent rect. 3 6
491 114.26 precipitation 0.1 270 < th dose dependent rect. 3 6
502 114.29 radiation 1.0 90 < th dose independent rect. 23 14
508 114.32 precipitation 0.1 90 < th dose independent rect. 23 6
510 114.32 precipitation 0.1 90 < th dose dependent rect. 23 6
512 114.33 atmosphere 995.0 90 > th dose independent rect. 9 20
515 114.34 wind 7.0 270 < th dose independent rect. 3 6
555 114.54 humidity 90.0 10 < th dose dependent rect. 5 3
557 114.55 wind 5.0 270 < th dose independent rect. 5 1
565 114.60 temperature 10.0 270 > th dose independent rect. 3 6
567 114.60 humidity 50.0 270 > th dose independent rect. 3 6
568 114.60 atmosphere 995.0 270 > th dose independent rect. 3 6
569 114.60 atmosphere 1015.0 270 < th dose independent rect. 3 6
570 114.60 temperature 10.0 270 > th dose independent rect. 9 18
578 114.67 humidity 70.0 270 > th dose independent rect. 3 8
590 114.74 temperature 10.0 1440 > th dose independent rect. 7 3
593 114.74 atmosphere 995.0 1440 > th dose independent rect. 7 3
594 114.74 atmosphere 1015.0 1440 < th dose independent rect. 7 3
595 114.74 temperature 10.0 1440 > th dose independent rect. 10 21
601 114.76 wind 1.0 270 > th dose independent rect. 3 19
607 114.80 wind 9.0 10 < th dose dependent rect. 6 3
641 114.95 temperature 15.0 10 > th dose dependent rect. 9 9
674 115.04 temperature 10.0 270 > th dose independent rect. 3 19
692 115.08 atmosphere 995.0 90 > th dose independent rect. 5 18
746 115.32 temperature 15.0 270 > th dose independent rect. 7 10
768 115.39 radiation 40.0 90 < th dose dependent rect. 5 18
785 115.47 atmosphere 995.0 10 > th dose independent rect. 9 21
793 115.49 humidity 70.0 10 > th dose dependent rect. 23 7
817 115.58 precipitation 0.1 90 < th dose independent rect. 5 18
819 115.58 precipitation 0.1 90 < th dose dependent rect. 5 18
827 115.62 wind 1.0 90 > th dose independent rect. 5 18
829 115.63 atmosphere 1015.0 270 < th dose independent rect. 2 21
838 115.65 wind 9.0 90 < th dose dependent rect. 23 6
844 115.68 radiation 20.0 270 < th dose independent rect. 16 16
873 115.75 atmosphere 1000.0 10 > th dose independent rect. 23 7
906 115.81 precipitation 0.1 270 < th dose independent rect. 5 1
909 115.81 precipitation 0.1 270 < th dose dependent rect. 5 1
938 115.90 wind 7.0 270 < th dose independent rect. 23 15
944 115.93 precipitation 0.1 270 < th dose independent rect. 3 19
947 115.93 precipitation 0.1 270 < th dose dependent rect. 3 19
953 115.95 temperature 10.0 270 > th dose independent rect. 5 1
955 115.95 temperature 30.0 270 < th dose independent rect. 5 1
956 115.95 humidity 50.0 270 > th dose independent rect. 5 1
959 115.95 atmosphere 995.0 270 > th dose independent rect. 5 1
960 115.95 atmosphere 1015.0 270 < th dose independent rect. 5 1
961 115.95 radiation 20.0 270 < th dose independent rect. 5 1
965 115.95 temperature 10.0 270 > th dose independent rect. 6 23
984 116.05 atmosphere 995.0 270 > th dose independent rect. 3 19