BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0546400 Os06g0546400|AK067243
         (211 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42710.1  | chr2:17782352-17784830 FORWARD LENGTH=416          205   1e-53
AT3G63490.1  | chr3:23444269-23446020 FORWARD LENGTH=347          126   1e-29

>AT2G42710.1 | chr2:17782352-17784830 FORWARD LENGTH=416
          Length = 415

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 127/184 (69%), Gaps = 1/184 (0%)

Query: 18  MVRGALTLPHGTGKTVRVAVFXXXXXXXXXXXXXXXXXXXXXLIEEIRTGGGKLSFDKCI 77
           +VRG L LPH   K V+VA F                     LIEEI    GK+ FD+C+
Sbjct: 225 IVRGTLALPHSVKKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEI-LKSGKIDFDRCL 283

Query: 78  ATPMYMPRLSKVARILGPRGLMPNPKLGSVTNDVSGAVKAAKSGRVDFKIDKTAIVHVGL 137
           ATP  MPR+ K++RIL   GLMPNPK GSVT DV+ AVK AK+G   F++DKT+I+HV L
Sbjct: 284 ATPKMMPRVYKISRILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPL 343

Query: 138 GKINFSDENLRENIGAFVHALLLAKPVGLKKTSKYVGYVKKFTLSSTMGPGFPVTIPSLS 197
           GK++FS+E LREN+GAF++ALLLAKP GLKKTSKY GYV  F L STMG G+PV+I SLS
Sbjct: 344 GKMSFSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSLS 403

Query: 198 AAAD 201
            AAD
Sbjct: 404 RAAD 407



>AT3G63490.1 | chr3:23444269-23446020 FORWARD LENGTH=347
          Length = 346

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 7/180 (3%)

Query: 17  QMVRGALTLPHGTGKTVRVAVFXXXXXXXXXXXXXXXXXXXXXLIEEIRTGGGKLSFDKC 76
           Q +R  ++LP GTG+TV VAV                      LIE+I+  GG + FDK 
Sbjct: 165 QQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIK--GGFMEFDKL 222

Query: 77  IATPMYMPRLSKVARILGPRGLMPNPKLGSVTNDVSGAVKAAKSGRVDFKIDKTAIVHVG 136
           IA+P  M +++ + +ILGPRGLMPNPK G+VT ++  A++  K G+V+F+ DKT IVH+ 
Sbjct: 223 IASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIP 282

Query: 137 LGKINFSDENLRENIGAFVHALLLAKPVGLKKTSKYVGYVKKFTLSSTMGPGFPVTIPSL 196
            GK+NF++E+L  N  A V ++   KP G K       Y K   + S+MGP   + I  +
Sbjct: 283 FGKVNFTEEDLLINFLAAVKSVETNKPKGAKGV-----YWKSAHICSSMGPSIKLNIREM 337



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,975,637
Number of extensions: 141580
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)