Os06g0542600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF295 family protein.
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Os06g0542600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF295 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.66 | 0.288 | 3.11 | -0.16 | 0.137 | 3.23 | 0.29 | -10.1 | -0.00644 | 18 | 0.2596 | 638 | -- | -- |
| 41.59 | 0.3 | 3.04 | 0.0426 | 0.0993 | 0.609 | 0.301 | -- | -0.0384 | 16.6 | 0.8291 | 159 | -- | -- |
| 37.71 | 0.286 | 3.11 | -0.153 | 0.154 | 3.29 | -- | -10.5 | -0.00907 | 19 | 0.3242 | 628 | -- | -- |
| 39.62 | 0.293 | 3.04 | 0.0496 | 0.0926 | 0.876 | -- | -- | -0.0287 | 17.3 | 1.443 | 300 | -- | -- |
| 38.68 | 0.29 | 3.11 | -0.182 | -- | 3.64 | -- | -11.6 | 0.00702 | -- | 0.3551 | 638 | -- | -- |
| 41.98 | 0.304 | 3.05 | 0.0776 | 0.153 | -- | 0.35 | -- | -0.0395 | 18.6 | -- | -- | -- | -- |
| 42.26 | 0.304 | 3.05 | 0.0716 | 0.155 | -- | -- | -- | -0.0388 | 19.2 | -- | -- | -- | -- |
| 40.22 | 0.295 | 3.04 | 0.0303 | -- | 0.92 | -- | -- | -0.0328 | -- | 1.416 | 317 | -- | -- |
| 39.5 | 0.293 | 3.05 | -- | 0.126 | 0.859 | -- | -- | -0.0346 | 18.8 | 1.422 | 362 | -- | -- |
| 43.53 | 0.308 | 3.04 | 0.0687 | -- | -- | -- | -- | -0.0416 | -- | -- | -- | -- | -- |
| 42.39 | 0.305 | 3.05 | -- | 0.154 | -- | -- | -- | -0.0468 | 19.2 | -- | -- | -- | -- |
| 40.25 | 0.295 | 3.04 | -- | -- | 0.925 | -- | -- | -0.0359 | -- | 1.408 | 316 | -- | -- |
| 43.65 | 0.308 | 3.04 | -- | -- | -- | -- | -- | -0.0492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.32 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 9 |
| 2 | 36.34 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 7 | 11 |
| 4 | 36.37 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 5 | 13 |
| 10 | 36.54 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 14 | 36.62 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 3 |
| 17 | 36.68 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 13 | 5 |
| 22 | 36.75 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 26 | 36.87 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 30 | 36.98 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 23 | NA |
| 46 | 37.20 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 16 | 1 |
| 117 | 37.71 | precipitation | 0.1 | 720 | > th | dose independent | sin | 22 | NA |
| 122 | 37.73 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 124 | 37.73 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 158 | 37.85 | precipitation | 0.1 | 720 | < th | dose independent | sin | 23 | NA |
| 159 | 37.85 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 23 | NA |
| 175 | 37.89 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 7 |
| 280 | 38.14 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 18 |
| 305 | 38.19 | precipitation | 0.1 | 720 | > th | dose dependent | no | NA | NA |
| 323 | 38.27 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 327 | 38.27 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 337 | 38.30 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 339 | 38.30 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 12 | 16 |
| 342 | 38.30 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 351 | 38.31 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 11 | 12 |
| 361 | 38.32 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 546 | 38.67 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 588 | 38.74 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 16 |
| 595 | 38.74 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 612 | 38.76 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 3 |
| 633 | 38.79 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 663 | 38.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 666 | 38.84 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 674 | 38.85 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 678 | 38.86 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 696 | 38.89 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 19 |
| 707 | 38.90 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 709 | 38.90 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 711 | 38.90 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 22 |
| 725 | 38.92 | precipitation | 0.1 | 720 | < th | dose independent | sin | 15 | NA |
| 731 | 38.92 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 15 | NA |
| 732 | 38.92 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 741 | 38.93 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 7 |
| 770 | 38.95 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 782 | 38.96 | precipitation | 0.1 | 720 | > th | dose independent | no | NA | NA |
| 783 | 38.96 | precipitation | 0.1 | 720 | < th | dose independent | no | NA | NA |
| 795 | 38.96 | precipitation | 0.1 | 720 | < th | dose dependent | no | NA | NA |
| 807 | 38.97 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 830 | 38.99 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 837 | 38.99 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 844 | 39.00 | wind | 9.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 850 | 39.00 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 865 | 39.01 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 876 | 39.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 903 | 39.04 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 904 | 39.04 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 907 | 39.04 | temperature | 15.0 | 720 | > th | dose independent | rect. | 15 | 16 |
| 924 | 39.05 | wind | 9.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 929 | 39.05 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 16 |
| 933 | 39.05 | temperature | 30.0 | 90 | < th | dose dependent | sin | 18 | NA |
| 947 | 39.06 | wind | 3.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 948 | 39.06 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 960 | 39.06 | wind | 7.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 961 | 39.06 | wind | 9.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 976 | 39.07 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 2 |