BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0542600 Os06g0542600|J075111K18
         (229 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65770.1  | chr1:24460656-24461738 REVERSE LENGTH=361           50   1e-06
AT3G25750.1  | chr3:9400955-9402088 FORWARD LENGTH=349             50   1e-06
AT1G65740.1  | chr1:24452096-24453211 REVERSE LENGTH=372           49   2e-06

>AT1G65770.1 | chr1:24460656-24461738 REVERSE LENGTH=361
          Length = 360

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 26/183 (14%)

Query: 37  NSWNWLAVDYTFVDCIYHDGWFYAVTSMGVIH------AFNLHGPSVVHKTIFPRIQDNN 90
            +W      Y F D I H G  YA+ S+G+++       F   GP V   T   R+ +  
Sbjct: 182 KTWKAKEEGYEFSDIIVHKGQTYALDSIGIVYWIRSDLKFIRFGPLVGDWTGDRRLVEC- 240

Query: 91  MHQEYIVQAPWGGLLRIYRTVDILEKEQRHNQVVRTLGFRVYRVSLDEQKLVRMTGIGEH 150
             + YIV+   G      +  D         +  +T+GF+VY+   ++ K++ +  +G+ 
Sbjct: 241 CGEFYIVERLVGESTWKRKADDT------GYEYAKTVGFKVYKFDDEQGKMMEVKSLGDK 294

Query: 151 ALFVGHNASVCLSVKDHP--TLMPNHVYFTDDDFETVFSFKSSRRDVGVCNIENNTVTKV 208
           A  +  +   C SV  H     + N +YFTDD    VF            N   +++   
Sbjct: 295 AFVIATD--TCFSVLAHEFYGCLENAIYFTDDTMIKVFKLD---------NGNGSSIETT 343

Query: 209 VYP 211
           +YP
Sbjct: 344 IYP 346



>AT3G25750.1 | chr3:9400955-9402088 FORWARD LENGTH=349
          Length = 348

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 35  GGNSWNWLAVDYT-FVDCIYHDGWFYAVTSMGVIHAFNLHGPSVVHKTI--------FPR 85
           G  SW  +      F D I H G  YAV   G I   +L   ++V +T         +  
Sbjct: 166 GSRSWTKIKNQVEDFSDIILHMGRIYAVDLKGAIWWISLSQLTIVQQTSSTPLDYYKYDS 225

Query: 86  IQDNNMHQEYIVQAPWGGLLRIYRTVDILEKEQRHNQVVRTLGFRVYRVSLDEQKLVRMT 145
            QD  +         + G L I   + I       N + RT+GF+VY++  D  K V ++
Sbjct: 226 CQDTRL-------VEYCGDLCIVHELSIT-----RNHIQRTVGFKVYKMDEDLAKWVEVS 273

Query: 146 GIGEHALFVGHNASVCLSVKDHPTLMPNHVYFTDDDFETVFSFKSSRRDVG 196
            +G++ L V  N+   +   ++   + N +YF+  D +   + K  + D G
Sbjct: 274 CLGDNTLIVACNSCFTVVASEYHGCLKNSIYFSYYDVKKAENIKVFKLDDG 324



>AT1G65740.1 | chr1:24452096-24453211 REVERSE LENGTH=372
          Length = 371

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 48  FVDCIYHDGWFYAVTSMGVIHAFNLHGPSVVHKTIFPRIQDNNMHQEYIVQAPWGGLLRI 107
           F D I H G  Y + S G++   N       ++T       N   + Y+      G L +
Sbjct: 201 FSDIIVHKGVTYVLDSKGIVWCINSDLEMSRYETSLDENMTNGCRRYYMRFVDCCGELYV 260

Query: 108 YRTVDILEKEQRHN---QVVRTLGFRVYRVSLDEQKLVRMTGIGEHALFVGHNASVCLSV 164
            + +      +R +   Q  RT GF+VY++  +  K V +  +G++A  +      C SV
Sbjct: 261 IKRLPKENSRKRKSTLFQFSRTAGFKVYKIDKELAKWVEVKTLGDNAFVMA--TDTCFSV 318

Query: 165 KDHP--TLMPNHVYFTDDDFETVF 186
             H     +PN +YF +D    VF
Sbjct: 319 LAHEYYGCLPNSIYFIEDLEPKVF 342



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,085,188
Number of extensions: 203543
Number of successful extensions: 529
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,502,049
Effective search space: 1139274566
Effective search space used: 1139274566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)