Os06g0538900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os06g0538900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.84 | 0.198 | 13.4 | 1.27 | 0.345 | -0.338 | -0.408 | 0.973 | 0.124 | 9.42 | 27.02 | 535 | -- | -- |
| 18.6 | 0.201 | 13.3 | 1.43 | 0.339 | -0.405 | -0.16 | -- | 0.177 | 9.75 | 24.87 | 829 | -- | -- |
| 18.13 | 0.198 | 13.3 | 1.27 | 0.321 | -0.323 | -- | 1 | 0.13 | 8.68 | 27.5 | 292 | -- | -- |
| 18.81 | 0.202 | 13.3 | 1.43 | 0.346 | -0.405 | -- | -- | 0.169 | 9.81 | 25 | 814 | -- | -- |
| 21.89 | 0.219 | 13.4 | 1.31 | -- | -0.356 | -- | 0.893 | 0.134 | -- | 27.5 | 292 | -- | -- |
| 21.07 | 0.215 | 13.3 | 1.56 | 0.282 | -- | -0.248 | -- | 0.251 | 9.85 | -- | -- | -- | -- |
| 21.29 | 0.216 | 13.3 | 1.55 | 0.285 | -- | -- | -- | 0.25 | 9.61 | -- | -- | -- | -- |
| 23.18 | 0.225 | 13.3 | 1.45 | -- | -0.41 | -- | -- | 0.173 | -- | 25 | 814 | -- | -- |
| 36.94 | 0.283 | 13.4 | -- | 0.299 | -1.11 | -- | -- | -0.252 | 9.77 | 73.26 | 47520 | -- | -- |
| 26.1 | 0.239 | 13.3 | 1.54 | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
| 84.21 | 0.429 | 13.4 | -- | 0.284 | -- | -- | -- | 0.0784 | 9.2 | -- | -- | -- | -- |
| 36.15 | 0.28 | 13.4 | -- | -- | -1.22 | -- | -- | -0.189 | -- | 20.98 | 47520 | -- | -- |
| 88.89 | 0.44 | 13.4 | -- | -- | -- | -- | -- | 0.0799 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.66 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 2 | 16.74 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 4 | 16.77 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 14 | 16.95 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 18 | 16.96 | temperature | 25 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 23 | 16.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 25 | 16.99 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 34 | 17.01 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 35 | 17.01 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 48 | 17.02 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 63 | 17.03 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 66 | 17.03 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 69 | 17.03 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 71 | 17.03 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 87 | 17.04 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 88 | 17.04 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 91 | 17.04 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 111 | 17.05 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 117 | 17.05 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 120 | 17.05 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 130 | 17.05 | temperature | 25 | 43200 | > th | dose dependent | sin | 3 | NA |
| 147 | 17.06 | temperature | 25 | 43200 | > th | dose independent | sin | 7 | NA |
| 150 | 17.06 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 156 | 17.06 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 176 | 17.07 | temperature | 25 | 43200 | < th | dose independent | sin | 7 | NA |
| 306 | 17.10 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 322 | 17.10 | temperature | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 323 | 17.10 | temperature | 25 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 398 | 17.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 400 | 17.11 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 415 | 17.11 | temperature | 25 | 43200 | > th | dose dependent | no | NA | NA |
| 458 | 17.11 | temperature | 25 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 506 | 17.12 | temperature | 25 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 509 | 17.13 | temperature | 25 | 43200 | > th | dose independent | sin | 12 | NA |
| 552 | 17.14 | temperature | 25 | 43200 | < th | dose independent | sin | 12 | NA |
| 563 | 17.14 | temperature | 25 | 43200 | > th | dose independent | rect. | 16 | 12 |
| 650 | 17.16 | temperature | 25 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 689 | 17.17 | temperature | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 698 | 17.17 | temperature | 25 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 718 | 17.17 | temperature | 20 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 791 | 17.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 794 | 17.19 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 836 | 17.20 | temperature | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 873 | 17.21 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 874 | 17.21 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 878 | 17.21 | temperature | 25 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 879 | 17.21 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 953 | 17.22 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 967 | 17.22 | temperature | 20 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 987 | 17.23 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |