BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0538900 Os06g0538900|AK063825
(165 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 114 2e-26
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 110 3e-25
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 103 6e-23
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 85 1e-17
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 85 2e-17
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 69 1e-12
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 5 LVEEHRSGAEVHTGHELCERKARXXXXXXXXXXXXXXXXXXXXVGYNRAAGFVWLRQTQA 64
+ EE R+ AE++TG E+C K + VGY+R +G VWL+Q ++
Sbjct: 4 VTEEVRAKAEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKKS 63
Query: 65 GGATHTFDTIGKQVWYAGEVTAFVEQGRMHGVAGVKSKELLIWVSISEIVLSPSGTKLVF 124
TH F I K V Y EVTA VE G++ + GVK+KELLIWV+I+EI TK+ F
Sbjct: 64 --ITHKFTEIDKLVSYGTEVTAIVETGKIKKLTGVKAKELLIWVTINEIYTEEPPTKITF 121
Query: 125 RTPAGLGRALPVTAF 139
+TP L R PVTAF
Sbjct: 122 KTPTTLSRTFPVTAF 136
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 5 LVEEHRSGAEVHTGHELCERKARXXXXXXXXXXXXXXXXXXXXVGYNRAAGFVWLRQTQA 64
+ +E R+ AE +TG E+C K + VGY+R G VWL+Q ++
Sbjct: 4 VTDEVRARAEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKKS 63
Query: 65 GGATHTFDTIGKQVWYAGEVTAFVEQGRMHGVAGVKSKELLIWVSISEIVLS-PSGT-KL 122
TH F+ IGK V YA EV A VE G++ + GVK+KELLIWV+++E+VL P+ + K+
Sbjct: 64 --ITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKI 121
Query: 123 VFRTPAGLGRALPVTAF 139
FRTP GL R PV+AF
Sbjct: 122 NFRTPTGLSRTFPVSAF 138
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 4/142 (2%)
Query: 1 MASQLVE-EHRSGAEVHTGHELCERKARXXXXXXXXXXXXXXXXXXXXVGYNRAAGFVWL 59
M+SQ + + R GAE+ G C++KA+ +G+N++ G+VW+
Sbjct: 1 MSSQETKSDQREGAEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVWI 60
Query: 60 RQTQAGGATHTFDTIGKQVWYAGEVTAFVEQGRMHGVAGVKSKELLIWVSISEIVLS-PS 118
+ H F IG+ V Y EVTA +E RM + G+KSKE+LIWV+ISEI ++
Sbjct: 61 KI--KNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQD 118
Query: 119 GTKLVFRTPAGLGRALPVTAFQ 140
T++ F P GL R PVTAF+
Sbjct: 119 PTQITFANPTGLSRTFPVTAFE 140
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 4 QLVEEHRSGAEVHTGHELCERKARXXXXXXXXXXXXXXXXXXXXVGYNRAAGFVWLRQTQ 63
+++ + E ++ LC KA+ VGYN+ GFVW+R
Sbjct: 5 EMIIDESDDIESYSDQSLCLDKAKELLALIKLPTGLLPLKDMTEVGYNKTKGFVWMRM-- 62
Query: 64 AGGATHTFDTIGKQVWYAGEVTAFVEQGRMHGVAGVKSKELLIWVSISEIVLSPSGTKLV 123
HTF IG++V Y E+TAFVE RM + GVKSKEL+IWV +++I + K++
Sbjct: 63 RSKIEHTFREIGRRVLYDTEITAFVEDRRMRRLTGVKSKELMIWVPVNDIFIK---RKIL 119
Query: 124 FRTP 127
R+P
Sbjct: 120 RRSP 123
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 9 HRSGAEVHTGHELCERKARXXXXXXXXXXXXXXXXXXXXVGYNRAAGFVWLRQTQAGGAT 68
R GAE+ G E C +++ G RA G+VW++Q
Sbjct: 12 EREGAEIVYGAEECYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYVWMKQDTP--YE 69
Query: 69 HTFDTIGKQVWYAGEVTAFVEQGRMHGVAGVKSKELLIWVSISEIVL-SPSGTKLVFRTP 127
H F+ +V Y EVTA+V++ M + GVKSK++ +WV I E+ + P K+ F+TP
Sbjct: 70 HFFEATNTRVSYGLEVTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEPKSKKIYFKTP 129
Query: 128 AGLGRALPVTAF 139
G+GR+ PVT F
Sbjct: 130 MGIGRSFPVTGF 141
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 5 LVEEHRSGAEVHTGHELCERKARXXXXXXXXXXXXXXXXXXXXVGYNRAAGFVWLRQTQA 64
+ E ++ AEV+ G + C K GY + GFVWL+ +
Sbjct: 2 VTEAMKAKAEVYHGDKTCREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKEK 61
Query: 65 GGATHT--------FDTIGKQVWYAGEVTAFVEQGRMHGVAGVKSKELLIWVSISEIVLS 116
FD + V + EVTA+ E R+ + GVK+KE ++W+S+ EI ++
Sbjct: 62 KKEDQKRRYQDLLRFDNV--VVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWISLGEIQVN 119
Query: 117 PSGTKLVFRTPAG-LGRALPVTAFQ 140
S + F+T G L ++LP++ F+
Sbjct: 120 RSSGLITFKTEVGLLSKSLPLSVFE 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,533,502
Number of extensions: 75179
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 6
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)