Os06g0530200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0530200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.78 | 0.147 | 11.7 | -0.444 | 0.305 | 0.179 | 0.0254 | 0.528 | -0.0696 | 5.85 | 20.02 | 4409 | -- | -- |
| 10.09 | 0.148 | 11.7 | -0.441 | 0.303 | 0.191 | 0.0159 | -- | -0.068 | 5.77 | 17.99 | 4415 | -- | -- |
| 9.78 | 0.146 | 11.7 | -0.444 | 0.305 | 0.179 | -- | 0.529 | -0.0696 | 5.86 | 20.02 | 4409 | -- | -- |
| 10.05 | 0.148 | 11.7 | -0.446 | 0.31 | 0.199 | -- | -- | -0.0712 | 5.85 | 16.25 | 4419 | -- | -- |
| 14.59 | 0.178 | 11.7 | -0.436 | -- | 0.187 | -- | 0.554 | -0.0732 | -- | 20.02 | 4331 | -- | -- |
| 11.03 | 0.156 | 11.7 | -0.486 | 0.309 | -- | 0.0373 | -- | -0.0554 | 5.86 | -- | -- | -- | -- |
| 11.03 | 0.156 | 11.7 | -0.486 | 0.309 | -- | -- | -- | -0.0555 | 5.87 | -- | -- | -- | -- |
| 14.64 | 0.178 | 11.7 | -0.46 | -- | 0.214 | -- | -- | -0.111 | -- | 21.88 | 27333 | -- | -- |
| 13.85 | 0.173 | 11.7 | -- | 0.276 | 0.236 | -- | -- | -0.0814 | 6.12 | 29.32 | 29939 | -- | -- |
| 15.98 | 0.187 | 11.7 | -0.477 | -- | -- | -- | -- | -0.0483 | -- | -- | -- | -- | -- |
| 17.25 | 0.194 | 11.6 | -- | 0.302 | -- | -- | -- | -0.00141 | 5.95 | -- | -- | -- | -- |
| 17.61 | 0.195 | 11.7 | -- | -- | 0.368 | -- | -- | -0.0328 | -- | 40 | 27384 | -- | -- |
| 21.97 | 0.219 | 11.6 | -- | -- | -- | -- | -- | 0.00452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.33 | radiation | 20 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 3 | 9.38 | radiation | 20 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 4 | 9.38 | radiation | 20 | 4320 | < th | dose dependent | rect. | 10 | 4 |
| 10 | 9.43 | radiation | 20 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 30 | 9.50 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 33 | 9.51 | radiation | 20 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 34 | 9.51 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 42 | 9.52 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 43 | 9.52 | radiation | 20 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 63 | 9.53 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 65 | 9.53 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 69 | 9.53 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 80 | 9.54 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 149 | 9.62 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 150 | 9.62 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 284 | 9.67 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 310 | 9.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 339 | 9.70 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 340 | 9.70 | radiation | 40 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 358 | 9.71 | radiation | 40 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 429 | 9.72 | radiation | 20 | 4320 | > th | dose independent | sin | 21 | NA |
| 462 | 9.72 | humidity | 90 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 463 | 9.72 | radiation | 40 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 639 | 9.76 | radiation | 20 | 4320 | < th | dose independent | sin | 21 | NA |
| 725 | 9.77 | radiation | 20 | 4320 | < th | dose dependent | sin | 22 | NA |
| 746 | 9.78 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 752 | 9.78 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 753 | 9.78 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 824 | 9.79 | radiation | 20 | 4320 | > th | dose independent | no | NA | NA |
| 976 | 9.79 | radiation | 1 | 4320 | > th | dose dependent | rect. | 10 | 5 |