BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0530200 Os06g0530200|AK073116
         (95 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24165.1  | chr5:8188622-8189087 FORWARD LENGTH=76              58   1e-09

>AT5G24165.1 | chr5:8188622-8189087 FORWARD LENGTH=76
          Length = 75

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 51/95 (53%), Gaps = 22/95 (23%)

Query: 1  MPRIPLIKFPKRNLKIXXXXXXXXXXXDQHASLLSRLGVKSEAPSS-SGEIKNYRFRSDV 59
          M RIP IKFP+R+                  S+ S  G    AP S SG  KN    SDV
Sbjct: 1  MRRIPRIKFPQRH------------------SISSGSG---PAPGSVSGVKKNVTASSDV 39

Query: 60 PSPPSYTAVGGPASLLPKRKPLSEEEIEAIMQGGI 94
          P+ P  TA GG ASL PKR P+S++EIE+IM GG 
Sbjct: 40 PAAPKNTADGGKASLQPKRTPVSDKEIESIMLGGC 74



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,872,559
Number of extensions: 64310
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)