Os06g0525200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0525200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.49 | 0.439 | 10.1 | -0.424 | 0.774 | 0.961 | 1.08 | 0.643 | -0.0444 | 8.41 | 21.4 | 825 | -- | -- |
| 88.65 | 0.439 | 10.2 | -0.564 | 0.772 | 0.926 | 0.954 | -- | -0.0827 | 8.27 | 21.5 | 856 | -- | -- |
| 90.29 | 0.443 | 10.1 | -0.449 | 0.776 | 0.913 | -- | 0.328 | -0.0721 | 8.03 | 21.5 | 825 | -- | -- |
| 90.33 | 0.443 | 10.2 | -0.561 | 0.775 | 0.906 | -- | -- | -0.0842 | 8.04 | 21.53 | 827 | -- | -- |
| 119.73 | 0.51 | 10.2 | -0.442 | -- | 0.739 | -- | 0.155 | -0.05 | -- | 22.3 | 1151 | -- | -- |
| 118.37 | 0.51 | 10.1 | -0.238 | 0.627 | -- | 0.716 | -- | 0.18 | 7.94 | -- | -- | -- | -- |
| 119.56 | 0.512 | 10.1 | -0.222 | 0.638 | -- | -- | -- | 0.178 | 7.5 | -- | -- | -- | -- |
| 119.75 | 0.51 | 10.2 | -0.461 | -- | 0.715 | -- | -- | -0.0526 | -- | 22.38 | 1147 | -- | -- |
| 96.6 | 0.458 | 10.1 | -- | 0.748 | 0.719 | -- | -- | -0.0131 | 8.05 | 22.2 | 815 | -- | -- |
| 141.3 | 0.555 | 10.1 | -0.212 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 120.86 | 0.514 | 10.1 | -- | 0.636 | -- | -- | -- | 0.203 | 7.52 | -- | -- | -- | -- |
| 124.82 | 0.52 | 10.1 | -- | -- | 0.618 | -- | -- | 0.0203 | -- | 22.33 | 1116 | -- | -- |
| 142.49 | 0.557 | 10.1 | -- | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 3 | 72.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 4 | 72.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 34 | 75.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 36 | 75.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 40 | 76.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 118 | 78.11 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 120 | 78.16 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 138 | 78.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 173 | 79.33 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 198 | 79.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 415 | 84.30 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 471 | 85.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 477 | 85.24 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 9 |
| 480 | 85.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 508 | 85.54 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 509 | 85.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 547 | 86.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 552 | 86.13 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 566 | 86.25 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 601 | 86.50 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 658 | 87.03 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 788 | 88.13 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 839 | 88.52 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 880 | 88.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 936 | 89.19 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |