FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0521000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.023) R2 : 0.0119
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.113 (0.0485) R2dN8 : 0.0153 R2N8 : 0.0119
σ : 0.433
deviance : 86.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.83 0.428 2.82 0.695 0.128 -4.26 -0.597 25.8 0.107 5.37 999.7 638 -- --
84.44 0.431 2.96 -0.0674 0.123 0.0714 -0.618 -- 0.103 5.51 999.7 638 -- --
83.51 0.426 2.82 0.68 0.131 -4.41 -- 26.8 0.112 6.77 999.5 591 -- --
84.75 0.429 2.96 -0.0773 0.124 0.229 -- -- 0.115 6.75 1001 1997 -- --
84.35 0.428 2.8 0.847 -- -5.47 -- 33.1 0.117 -- 999.3 612 -- --
84.48 0.431 2.96 -0.0621 0.122 -- -0.619 -- 0.101 5.51 -- -- -- --
85.33 0.433 2.96 -0.0633 0.126 -- -- -- 0.104 6.7 -- -- -- --
85.58 0.431 2.96 -0.0818 -- 0.229 -- -- 0.118 -- 1001 1997 -- --
84.93 0.429 2.96 -- 0.126 0.21 -- -- 0.123 6.68 1001 2004 -- --
86.16 0.434 2.96 -0.0604 -- -- -- -- 0.107 -- -- -- -- --
85.44 0.432 2.96 -- 0.125 -- -- -- 0.111 6.73 -- -- -- --
85.75 0.431 2.96 -- -- 0.211 -- -- 0.126 -- 1001 2004 -- --
86.25 0.433 2.96 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.00 temperature 25.0 270 > th dose independent rect. 1 1
3 76.13 temperature 25.0 90 > th dose independent rect. 1 4
6 76.25 temperature 25.0 270 > th dose dependent rect. 2 1
19 78.10 precipitation 0.1 270 > th dose independent rect. 18 1
20 78.10 precipitation 0.1 270 > th dose dependent rect. 18 1
22 78.18 atmosphere 1005.0 270 > th dose dependent rect. 1 1
23 78.20 atmosphere 1005.0 30 > th dose dependent rect. 1 4
34 78.90 temperature 25.0 10 > th dose independent rect. 4 1
39 78.93 temperature 25.0 90 > th dose dependent rect. 4 1
41 79.05 humidity 90.0 10 < th dose independent rect. 4 1
46 79.21 wind 1.0 30 > th dose independent rect. 4 1
50 79.38 wind 1.0 30 > th dose dependent rect. 4 1
53 79.61 wind 7.0 1440 < th dose independent rect. 5 1
55 79.61 temperature 10.0 1440 > th dose independent rect. 5 1
58 79.61 temperature 30.0 1440 < th dose independent rect. 5 1
62 79.61 humidity 50.0 1440 > th dose independent rect. 5 1
71 79.61 atmosphere 995.0 1440 > th dose independent rect. 5 1
72 79.61 atmosphere 1015.0 1440 < th dose independent rect. 5 1
73 79.61 radiation 20.0 1440 < th dose independent rect. 5 1
82 79.61 temperature 10.0 1440 > th dose independent rect. 6 23
86 79.70 atmosphere 1005.0 30 > th dose dependent rect. 4 1
98 79.95 wind 1.0 30 > th dose independent rect. 5 23
100 79.96 atmosphere 1005.0 30 > th dose independent rect. 1 4
108 80.07 atmosphere 1005.0 30 > th dose independent rect. 4 1
119 80.14 wind 3.0 30 < th dose independent rect. 4 1
125 80.15 radiation 1.0 30 < th dose dependent rect. 4 1
130 80.16 temperature 10.0 30 > th dose independent rect. 4 1
132 80.16 temperature 30.0 30 < th dose independent rect. 4 1
133 80.16 humidity 50.0 30 > th dose independent rect. 4 1
137 80.16 atmosphere 995.0 30 > th dose independent rect. 4 1
139 80.16 atmosphere 1010.0 30 < th dose independent rect. 4 1
141 80.16 radiation 1.0 30 < th dose independent rect. 4 1
146 80.16 precipitation 0.1 30 < th dose independent rect. 4 1
147 80.16 temperature 10.0 30 > th dose independent rect. 5 23
150 80.16 precipitation 0.1 30 < th dose dependent rect. 4 1
153 80.17 wind 9.0 30 < th dose dependent rect. 4 1
156 80.19 humidity 50.0 30 > th dose dependent rect. 4 1
170 80.26 atmosphere 1015.0 30 < th dose dependent rect. 4 1
172 80.27 wind 1.0 10 < th dose dependent rect. 2 1
180 80.32 temperature 30.0 30 < th dose dependent rect. 4 1
194 80.38 atmosphere 1000.0 270 < th dose independent rect. 16 1
199 80.40 humidity 90.0 270 < th dose independent rect. 1 1
202 80.42 atmosphere 995.0 30 > th dose independent rect. 5 23
203 80.42 atmosphere 1000.0 270 < th dose dependent rect. 16 1
204 80.43 wind 9.0 30 < th dose independent rect. 5 23
250 80.53 wind 1.0 30 < th dose independent rect. 24 3
256 80.55 precipitation 0.1 270 > th dose dependent rect. 10 8
257 80.56 atmosphere 1005.0 10 > th dose independent rect. 2 1
262 80.59 precipitation 0.1 30 < th dose independent rect. 5 23
265 80.59 precipitation 0.1 30 < th dose dependent rect. 5 23
266 80.60 temperature 20.0 10 < th dose independent rect. 11 9
283 80.65 temperature 20.0 10 < th dose independent rect. 17 3
291 80.65 radiation 1.0 14400 < th dose dependent rect. 3 1
292 80.66 temperature 20.0 10 < th dose independent rect. 19 1
313 80.69 precipitation 0.1 270 > th dose dependent rect. 8 10
317 80.71 atmosphere 1000.0 10 > th dose dependent rect. 2 1
319 80.72 temperature 25.0 1440 < th dose independent rect. 1 1
320 80.72 temperature 25.0 10 < th dose independent rect. 2 1
341 80.78 atmosphere 1005.0 270 > th dose independent rect. 1 1
342 80.78 wind 1.0 10 < th dose independent rect. 21 6
350 80.78 wind 1.0 10 < th dose independent rect. 11 16
357 80.80 temperature 30.0 30 < th dose dependent rect. 2 1
361 80.81 temperature 10.0 10 > th dose independent rect. 2 1
364 80.81 humidity 50.0 10 > th dose independent rect. 2 1
368 80.81 atmosphere 1010.0 10 < th dose independent rect. 2 1
370 80.81 radiation 1.0 10 < th dose independent rect. 2 1
375 80.81 precipitation 0.1 10 < th dose independent rect. 2 1
377 80.81 temperature 10.0 10 > th dose independent rect. 3 23
378 80.81 radiation 1.0 10 < th dose dependent rect. 2 1
383 80.81 precipitation 0.1 10 < th dose dependent rect. 2 1
402 80.86 temperature 10.0 10 > th dose dependent rect. 2 1
433 80.88 atmosphere 995.0 10 > th dose independent rect. 3 23
441 80.90 atmosphere 1015.0 30 < th dose dependent rect. 2 1
442 80.91 wind 9.0 10 < th dose independent rect. 3 23
444 80.92 humidity 50.0 30 > th dose dependent rect. 2 1
445 80.92 humidity 90.0 90 < th dose dependent rect. 4 1
463 80.96 wind 9.0 1440 < th dose independent rect. 3 1
464 80.96 temperature 10.0 1440 > th dose independent rect. 3 1
467 80.96 temperature 30.0 1440 < th dose independent rect. 3 1
471 80.96 humidity 50.0 1440 > th dose independent rect. 3 1
480 80.96 atmosphere 995.0 1440 > th dose independent rect. 3 1
481 80.96 radiation 1.0 1440 < th dose independent rect. 3 1
501 80.96 temperature 10.0 1440 > th dose independent rect. 4 23
505 80.96 radiation 1.0 1440 < th dose dependent rect. 3 1
514 80.97 wind 1.0 30 > th dose independent rect. 2 1
527 81.01 humidity 90.0 30 > th dose independent rect. 2 1
530 81.03 humidity 90.0 10 < th dose dependent rect. 4 1
551 81.10 atmosphere 1000.0 720 < th dose dependent rect. 10 1
558 81.12 precipitation 0.1 30 < th dose independent rect. 3 23
560 81.12 precipitation 0.1 30 < th dose dependent rect. 3 23
566 81.15 wind 1.0 30 < th dose dependent rect. 7 20
572 81.19 atmosphere 1000.0 720 < th dose independent rect. 10 1
578 81.22 wind 1.0 10 < th dose independent rect. 7 20
582 81.23 precipitation 0.1 270 > th dose independent rect. 10 8
615 81.33 atmosphere 1000.0 720 < th dose independent rect. 9 3
626 81.38 temperature 10.0 30 > th dose dependent rect. 5 20
628 81.39 precipitation 0.1 270 > th dose dependent sin 21 NA
680 81.54 precipitation 0.1 270 > th dose independent rect. 8 10
695 81.56 humidity 50.0 10 > th dose independent rect. 3 23
710 81.62 atmosphere 1005.0 10 < th dose independent rect. 20 1
714 81.62 wind 1.0 30 < th dose dependent rect. 17 10
776 81.73 humidity 50.0 30 > th dose independent rect. 5 23
779 81.73 wind 1.0 30 < th dose dependent rect. 10 17
873 81.95 atmosphere 1000.0 1440 < th dose independent rect. 23 3
874 81.95 atmosphere 1000.0 1440 < th dose dependent rect. 22 4
890 81.99 wind 9.0 1440 > th dose independent rect. 19 2
915 81.99 wind 9.0 1440 > th dose dependent rect. 19 2
945 82.00 atmosphere 1000.0 1440 > th dose independent rect. 22 6
946 82.00 atmosphere 1005.0 30 > th dose independent rect. 1 14
956 82.01 temperature 25.0 270 < th dose dependent rect. 17 1
962 82.02 wind 9.0 4320 < th dose independent rect. 2 4
966 82.02 atmosphere 1005.0 10 > th dose independent rect. 1 11
978 82.03 wind 9.0 1440 < th dose independent rect. 19 13
989 82.04 atmosphere 1000.0 1440 < th dose independent rect. 1 1