BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0521000 Os06g0521000|AK119927
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303 87 1e-17
AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591 65 4e-11
AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592 52 3e-07
>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
Length = 302
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 139 SGDEEAHT--VRTEKRLTWSTEEDIRLVSAWLNNSNDSISGNFKKNDRYWGDVTAEYNST 196
S ++ AHT V+ E+R WS ED+ LVSAWLN S D++ GN +K +W + A Y ++
Sbjct: 33 SPNQAAHTPKVKRERR-KWSAGEDLVLVSAWLNTSKDAVIGNEQKGYAFWSRIAAYYGAS 91
Query: 197 TPKN--RTRQEKQIKDRFHKIKKNVGRFCCVYKEVKSIYVSGQNDMQLREKAEAAYQADY 254
N R+ IK R+ KI + VG+F Y+ SGQND + A Y +++
Sbjct: 92 PKLNGVEKRETGHIKQRWTKINEGVGKFVGSYEAATKQKSSGQNDDDVVALAHEIYNSEH 151
Query: 255 KEGPFSFLHCWNILRDQPKWHS 276
G F+ H W +LR + KW S
Sbjct: 152 --GKFTLEHAWRVLRFEQKWLS 171
>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
Length = 590
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 146 TVRTEKRLTWSTEEDIRLVSAWLNNSNDSISGNFKKNDRYWGDVTAEYNSTT-----PKN 200
T R + R WS ED L+SAWLN S D I N K +W + A +N++ PK
Sbjct: 264 TDRRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAYFNNSASLANLPK- 322
Query: 201 RTRQEKQIKDRFHKIKKNVGRFCCVYKEVKSIYVSGQNDMQLREKAEAAYQADYKEGPFS 260
R+ K R+ K+ V +F Y + + SGQ++ + + A Y +YK F+
Sbjct: 323 --REPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVYTNNYKSN-FT 379
Query: 261 FLHCWNILRDQPKWHSY 277
H W LR KW S
Sbjct: 380 LEHAWRELRHSKKWCSL 396
>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
Length = 591
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 146 TVRTEKRLTWSTEEDIRLVSAWLNNSNDS--ISGNFKKNDRYWGDVTAEY-NSTTPKNRT 202
T R +R WS +D+ L+SAWLN S D + + ++ +W + A NS + N
Sbjct: 264 TDRKARRRKWSPPDDVILISAWLNTSKDRKVVVYDEQQAHTFWKRIGAHVSNSASLANLP 323
Query: 203 RQE-KQIKDRFHKIKKNVGRFCCVYKEVKSIYVSGQNDMQLREKAEAAYQADYKEGPFSF 261
++E + R+ KI V +F Y + + SGQ++ + + A Y +Y F
Sbjct: 324 KREWNHCRQRWRKINDYVCKFVGCYDQALNQRASGQSEDDVFQVAYQLYYNNYMSN-FKL 382
Query: 262 LHCWNILRDQPKWHS 276
H W LR KW S
Sbjct: 383 EHAWRELRHNKKWCS 397
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,130,189
Number of extensions: 265516
Number of successful extensions: 725
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 3
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)