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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0517300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thionin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0152) R2 : 0.00117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0234 (0.032) R2dN8 : 0.00151 R2N8 : 0.00117
σ : 0.286
deviance : 37.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.08 0.282 3.02 0.102 0.145 -0.222 -0.128 -0.00734 0.00433 4.44 93.09 2 -- --
36.08 0.28 3.02 0.103 0.145 -0.219 -0.13 -- 0.00445 4.42 93 2 -- --
36.1 0.28 3.02 0.105 0.149 -0.22 -- -0.0992 0.00433 4.66 93 2 -- --
36.12 0.28 3.02 0.105 0.148 -0.227 -- -- 0.00497 4.61 93 2 -- --
36.98 0.283 3.02 0.0998 -- -0.109 -- -0.085 0.0213 -- 93 2 -- --
36.86 0.285 3.02 0.082 0.0718 -- -0.244 -- 0.0299 4.15 -- -- -- --
37 0.285 3.02 0.0849 0.0751 -- -- -- 0.0312 5.24 -- -- -- --
37 0.283 3.02 0.0988 -- -0.115 -- -- 0.0203 -- 93 2 -- --
36.4 0.281 3.02 -- 0.146 -0.215 -- -- -0.00618 4.63 93 2 -- --
37.3 0.285 3.02 0.0875 -- -- -- -- 0.0331 -- -- -- -- --
37.19 0.285 3.02 -- 0.0766 -- -- -- 0.0217 5.19 -- -- -- --
37.25 0.285 3.02 -- -- -0.104 -- -- 0.0106 -- 93 2 -- --
37.5 0.286 3.02 -- -- -- -- -- 0.0234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.62 temperature 25.0 10 > th dose dependent rect. 22 1
3 33.00 temperature 25.0 10 > th dose independent rect. 22 1
5 33.16 humidity 90.0 10 < th dose independent rect. 22 1
6 33.16 atmosphere 1015.0 30 < th dose dependent rect. 22 1
12 33.25 humidity 90.0 30 < th dose dependent rect. 22 1
14 33.29 precipitation 0.1 30 < th dose independent rect. 22 1
15 33.29 precipitation 0.1 30 < th dose dependent rect. 22 1
16 33.30 wind 1.0 30 > th dose independent rect. 22 1
18 33.31 wind 1.0 30 > th dose dependent rect. 22 1
20 33.32 wind 5.0 30 < th dose independent rect. 22 1
23 33.32 temperature 10.0 30 > th dose independent rect. 22 1
25 33.32 temperature 30.0 30 < th dose independent rect. 22 1
26 33.32 humidity 50.0 30 > th dose independent rect. 22 1
29 33.32 atmosphere 995.0 30 > th dose independent rect. 22 1
30 33.32 atmosphere 1010.0 30 < th dose independent rect. 22 1
32 33.32 radiation 1.0 30 < th dose independent rect. 22 1
37 33.32 temperature 10.0 30 > th dose independent rect. 23 23
38 33.32 radiation 1.0 30 < th dose dependent rect. 22 1
44 33.34 wind 9.0 30 < th dose dependent rect. 22 1
46 33.35 humidity 50.0 30 > th dose dependent rect. 22 1
47 33.36 wind 9.0 1440 < th dose independent rect. 23 1
48 33.36 temperature 10.0 1440 > th dose independent rect. 23 1
51 33.36 temperature 30.0 1440 < th dose independent rect. 23 1
55 33.36 humidity 50.0 1440 > th dose independent rect. 23 1
65 33.36 atmosphere 995.0 1440 > th dose independent rect. 23 1
66 33.36 radiation 1.0 1440 < th dose independent rect. 23 1
86 33.36 temperature 10.0 1440 > th dose independent rect. 24 23
89 33.36 radiation 1.0 1440 < th dose dependent rect. 23 1
98 33.41 atmosphere 995.0 30 > th dose dependent rect. 22 1
99 33.41 atmosphere 1005.0 30 > th dose dependent rect. 22 1
137 33.60 wind 9.0 30 < th dose independent rect. 23 23
139 33.60 temperature 30.0 30 < th dose dependent rect. 22 1
173 34.71 temperature 20.0 30 > th dose dependent rect. 2 1
174 34.72 atmosphere 1005.0 30 > th dose dependent rect. 2 1
175 34.74 temperature 20.0 30 > th dose independent rect. 2 1
176 34.74 atmosphere 1005.0 30 > th dose independent rect. 2 1
185 34.78 wind 3.0 30 < th dose dependent rect. 2 1
187 34.79 wind 3.0 30 < th dose independent rect. 2 1
193 34.82 temperature 10.0 30 > th dose independent rect. 2 1
195 34.82 temperature 25.0 30 < th dose independent rect. 2 1
197 34.82 humidity 50.0 30 > th dose independent rect. 2 1
202 34.82 atmosphere 1010.0 30 < th dose independent rect. 2 1
204 34.82 radiation 1.0 30 < th dose independent rect. 2 1
209 34.82 precipitation 0.1 30 < th dose independent rect. 2 1
210 34.82 temperature 10.0 30 > th dose independent rect. 3 23
211 34.82 humidity 50.0 30 > th dose dependent rect. 2 1
213 34.82 radiation 1.0 30 < th dose dependent rect. 2 1
218 34.82 precipitation 0.1 30 < th dose dependent rect. 2 1
221 34.83 atmosphere 995.0 10 > th dose independent rect. 23 23
230 34.97 atmosphere 1015.0 30 < th dose dependent rect. 2 1
231 34.99 temperature 30.0 30 < th dose dependent rect. 2 1
238 35.07 wind 1.0 30 > th dose independent rect. 2 1
278 35.23 temperature 25.0 270 > th dose independent rect. 1 1
279 35.23 wind 9.0 30 < th dose independent rect. 3 23
284 35.25 temperature 20.0 30 > th dose dependent rect. 2 3
288 35.27 precipitation 0.1 90 < th dose independent rect. 23 22
290 35.27 precipitation 0.1 90 < th dose dependent rect. 23 22
301 35.33 atmosphere 1005.0 30 > th dose dependent rect. 2 3
340 35.40 radiation 10.0 43200 < th dose dependent rect. 3 1
352 35.43 wind 9.0 1440 < th dose independent rect. 3 1
354 35.43 temperature 10.0 1440 > th dose independent rect. 3 1
357 35.43 temperature 30.0 1440 < th dose independent rect. 3 1
361 35.43 humidity 50.0 1440 > th dose independent rect. 3 1
370 35.43 atmosphere 995.0 1440 > th dose independent rect. 3 1
371 35.43 radiation 1.0 1440 < th dose independent rect. 3 1
391 35.43 temperature 10.0 1440 > th dose independent rect. 4 23
397 35.43 radiation 1.0 1440 < th dose dependent rect. 3 1
412 35.45 atmosphere 995.0 90 > th dose independent rect. 11 10
421 35.47 radiation 30.0 90 < th dose dependent rect. 23 10
423 35.48 radiation 20.0 90 < th dose independent rect. 23 10
433 35.51 atmosphere 1015.0 90 < th dose independent rect. 23 22
443 35.54 temperature 15.0 90 > th dose independent rect. 21 14
444 35.54 precipitation 0.1 90 < th dose independent rect. 21 14
448 35.54 precipitation 0.1 90 < th dose dependent rect. 21 14
451 35.56 wind 7.0 90 < th dose independent rect. 11 10
453 35.56 temperature 10.0 90 > th dose independent rect. 11 10
454 35.56 atmosphere 1015.0 90 < th dose independent rect. 11 10
456 35.56 atmosphere 995.0 90 > th dose independent rect. 21 14
458 35.56 radiation 20.0 10 < th dose dependent rect. 23 23
461 35.57 wind 7.0 90 < th dose independent rect. 21 14
462 35.57 humidity 50.0 90 > th dose independent rect. 23 22
478 35.60 temperature 30.0 90 < th dose independent rect. 21 14
482 35.61 humidity 50.0 90 > th dose independent rect. 21 14
501 35.64 radiation 10.0 90 < th dose dependent rect. 23 22
503 35.65 precipitation 0.1 1440 < th dose independent rect. 23 1
510 35.65 precipitation 0.1 1440 < th dose dependent rect. 23 1
514 35.66 temperature 15.0 90 > th dose independent rect. 23 8
521 35.66 wind 3.0 30 < th dose dependent rect. 2 3
525 35.67 wind 9.0 90 < th dose independent rect. 23 8
527 35.67 temperature 30.0 90 < th dose independent rect. 23 8
528 35.67 humidity 50.0 90 > th dose independent rect. 23 8
531 35.67 atmosphere 995.0 90 > th dose independent rect. 23 8
532 35.67 radiation 20.0 90 < th dose independent rect. 23 8
535 35.67 wind 1.0 90 > th dose independent rect. 11 10
538 35.67 temperature 10.0 90 > th dose independent rect. 7 16
539 35.67 atmosphere 1015.0 90 < th dose independent rect. 7 16
548 35.68 atmosphere 995.0 270 > th dose independent rect. 9 10
549 35.68 precipitation 0.1 90 < th dose independent rect. 11 10
552 35.68 radiation 40.0 90 < th dose dependent rect. 23 8
553 35.68 precipitation 0.1 90 < th dose dependent rect. 11 10
555 35.69 temperature 25.0 10 > th dose independent rect. 5 1
559 35.69 atmosphere 1005.0 30 > th dose independent rect. 2 3
561 35.69 radiation 20.0 10 < th dose independent rect. 24 9
564 35.69 precipitation 0.1 90 < th dose independent rect. 7 16
571 35.69 temperature 10.0 90 > th dose dependent rect. 21 14
572 35.69 precipitation 0.1 90 < th dose dependent rect. 7 16
645 35.71 atmosphere 1015.0 90 < th dose independent rect. 21 14
647 35.71 wind 9.0 90 < th dose independent rect. 7 16
658 35.71 humidity 50.0 90 > th dose dependent rect. 23 10
683 35.73 precipitation 0.1 90 < th dose independent rect. 23 8
700 35.73 precipitation 0.1 90 < th dose dependent rect. 23 8
706 35.74 radiation 10.0 10 < th dose independent rect. 23 22
708 35.74 precipitation 0.1 30 < th dose independent rect. 3 23
716 35.74 precipitation 0.1 30 < th dose dependent rect. 3 23
725 35.75 humidity 50.0 90 > th dose dependent rect. 23 8
734 35.76 radiation 1.0 90 < th dose independent rect. 23 22
750 35.78 temperature 10.0 90 > th dose dependent rect. 11 10
757 35.79 temperature 10.0 90 > th dose independent rect. 23 10
759 35.79 humidity 50.0 90 > th dose independent rect. 23 10
760 35.79 atmosphere 995.0 90 > th dose independent rect. 23 10
762 35.79 temperature 10.0 90 > th dose independent rect. 9 14
763 35.79 atmosphere 1015.0 90 < th dose independent rect. 9 14
790 35.80 wind 9.0 90 < th dose independent rect. 23 10
792 35.80 precipitation 0.1 90 < th dose independent rect. 9 14
804 35.80 precipitation 0.1 90 < th dose dependent rect. 9 14
807 35.81 atmosphere 995.0 10 > th dose independent rect. 12 9
827 35.82 wind 3.0 30 < th dose independent rect. 2 3
863 35.84 temperature 30.0 90 < th dose independent rect. 23 10
866 35.84 wind 1.0 90 > th dose independent rect. 7 16
867 35.84 atmosphere 995.0 720 > th dose independent rect. 23 16
874 35.84 radiation 30.0 10 < th dose dependent rect. 24 9
878 35.85 precipitation 0.1 90 < th dose independent rect. 23 10
883 35.85 radiation 40.0 90 < th dose independent rect. 21 14
889 35.85 temperature 15.0 30 > th dose dependent rect. 21 6
891 35.85 precipitation 0.1 90 < th dose dependent rect. 23 10
896 35.86 wind 1.0 90 > th dose independent rect. 9 14
902 35.86 radiation 10.0 10 < th dose dependent rect. 2 4
924 35.87 temperature 10.0 90 > th dose dependent rect. 23 22
927 35.88 atmosphere 1015.0 90 < th dose independent rect. 23 8
931 35.88 atmosphere 1010.0 10 < th dose independent rect. 11 10
933 35.88 wind 9.0 90 < th dose independent rect. 9 14
952 35.89 wind 1.0 90 > th dose independent rect. 21 14
954 35.89 radiation 40.0 270 < th dose independent rect. 19 14
964 35.89 wind 9.0 90 < th dose dependent rect. 23 8
970 35.90 temperature 10.0 270 > th dose independent rect. 9 10
971 35.90 atmosphere 1015.0 270 < th dose independent rect. 9 10
980 35.90 temperature 15.0 270 > th dose independent rect. 5 18
982 35.90 atmosphere 1005.0 10 > th dose dependent rect. 4 1
991 35.90 temperature 10.0 90 > th dose dependent rect. 23 8
995 35.91 temperature 10.0 1440 > th dose independent rect. 24 8
998 35.91 temperature 30.0 1440 < th dose independent rect. 24 8