BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0517300 Os06g0517300|J075167K24
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66100.1  | chr1:24605876-24606473 REVERSE LENGTH=135           62   4e-11
AT5G36910.1  | chr5:14562053-14562673 REVERSE LENGTH=135           57   2e-09
AT1G72260.1  | chr1:27198803-27199358 REVERSE LENGTH=135           57   3e-09
AT2G15010.1  | chr2:6484422-6485001 FORWARD LENGTH=136             51   2e-07

>AT1G66100.1 | chr1:24605876-24606473 REVERSE LENGTH=135
          Length = 134

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 10  KSPIMCVLVLGLVLQQETIKVEAKSCCPTTTARNIYNACRFALGTRERCSKLSGC-KIVD 68
           K+ I+ VL++ L + Q   +V+A  CCP+  AR  YNAC FA+G+   C + S C  I +
Sbjct: 4   KTLIVSVLIMSLFMAQN--QVDANICCPSIQARTFYNACLFAVGSPSSCIRNSSCLDISE 61

Query: 69  GKCKPPYIHHTLYPESEESDVLDFCMLGCTSSMC 102
             C   Y +  L  E+    V ++C LGC SS+C
Sbjct: 62  STCPRGYTNDIL--ENTGDAVTEYCKLGCVSSVC 93



>AT5G36910.1 | chr5:14562053-14562673 REVERSE LENGTH=135
          Length = 134

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 10  KSPIMCVLVLGLVLQQETIKVEAKSCCPTTTARNIYNACRFALGTRERCSKLSGCKIVDG 69
           K+ I  +L++ LVL Q  I+VEAK CCPT   R++Y  C  ++ ++  C   S CK    
Sbjct: 4   KTVISSLLIMSLVLAQ--IQVEAKICCPTKDDRSVYFVCMLSVSSQFYCLLKSKCKNTSQ 61

Query: 70  K-CKPPYIHHTLYPESEESDVLDFCMLGCTSSMCSNMNT 107
             C P Y +  L  E+    V ++C LGC SS+C  + T
Sbjct: 62  TICPPGYTNDIL--ENSGDAVNEYCKLGCASSVCGALTT 98



>AT1G72260.1 | chr1:27198803-27199358 REVERSE LENGTH=135
          Length = 134

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 4/80 (5%)

Query: 28  IKVEAKSCCPTTTARNIYNACRFALGTRERCSKLSGCKIVDGKCKPPYIHHTLYPESEES 87
           ++VEAK CCP+  ARN Y+ CR    ++ RC ++SGC+  D  C   +++  L   ++ +
Sbjct: 20  VQVEAKICCPSNQARNGYSVCRIRF-SKGRCMQVSGCQNSD-TCPRGWVNAILENSADAT 77

Query: 88  DVLDFCMLGCTSSMCSNMNT 107
           +  + C LGC +S+C  MNT
Sbjct: 78  N--EHCKLGCETSVCGAMNT 95



>AT2G15010.1 | chr2:6484422-6485001 FORWARD LENGTH=136
          Length = 135

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 10  KSPIMCVLVLGLVLQQETIKVEA-KSCCPTTTARNIYNACRFALGTRERCSKLSGCK-IV 67
           K+ I  VLV+GLV+ Q  I+VEA K+CCP+ + R  +  C      +  CS  SGC+   
Sbjct: 4   KTVIFSVLVMGLVISQ--IQVEAQKTCCPSQSTRKEFEDCISEGNLQILCSAESGCRDTY 61

Query: 68  DGKCKPPYIHHTLYPESEESDVLD-FCMLGCTSSMCSNMNT 107
            G C   + + +L   +   DV++ +C LGC SS+C  + +
Sbjct: 62  VGYCPSGFPYGSL---TNSGDVVNVYCKLGCVSSLCGALTS 99



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.132    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,556,365
Number of extensions: 97100
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 4
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)