Os06g0512700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thionin Osthi1.
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Os06g0512700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thionin Osthi1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.61 | 0.665 | 3.17 | 0.654 | 0.122 | 116 | 0.131 | 249 | -0.0295 | 8.62 | 20 | 10 | 8 | 2 |
| 238.98 | 0.726 | 2.92 | 0.178 | 0.149 | 3.39 | 0.509 | -- | -0.0267 | 8.23 | 20 | 10 | 8 | 2 |
| 200.67 | 0.665 | 2.94 | 0.161 | 0.122 | 9.85 | -- | 20.1 | -0.0296 | 8.54 | 20 | 10 | 8 | 2 |
| 200.93 | 0.665 | 2.92 | 0.0862 | 0.126 | 7.28 | -- | -- | -0.0322 | 8.57 | 20 | 14 | 6.16 | 1.89 |
| 201.5 | 0.665 | 2.94 | 0.162 | -- | 9.95 | -- | 20.2 | -0.0281 | -- | 20 | 10 | 8 | 2 |
| 253.07 | 0.746 | 2.92 | 0.133 | 0.189 | -- | 0.356 | -- | -0.0469 | 8.23 | -- | -- | -- | -- |
| 253.46 | 0.746 | 2.92 | 0.143 | 0.189 | -- | -- | -- | -0.0471 | 8.28 | -- | -- | -- | -- |
| 201.82 | 0.665 | 2.92 | 0.0862 | -- | 7.34 | -- | -- | -0.0309 | -- | 20 | 14 | 6.16 | 1.89 |
| 201.13 | 0.664 | 2.92 | -- | 0.126 | 7.3 | -- | -- | -0.0417 | 8.52 | 19.98 | 9 | 6.39 | 2.15 |
| 255.44 | 0.747 | 2.93 | 0.144 | -- | -- | -- | -- | -0.045 | -- | -- | -- | -- | -- |
| 254 | 0.746 | 2.93 | -- | 0.19 | -- | -- | -- | -0.063 | 8.23 | -- | -- | -- | -- |
| 202.02 | 0.664 | 2.93 | -- | -- | 7.36 | -- | -- | -0.0404 | -- | 20 | 14 | 6.16 | 1.89 |
| 255.99 | 0.747 | 2.93 | -- | -- | -- | -- | -- | -0.061 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.61 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 7 | 200.61 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 25 | 200.81 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 11 |
| 33 | 200.83 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 41 | 200.83 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 163 | 216.19 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 175 | 217.71 | wind | 3 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 182 | 219.91 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 193 | 225.63 | humidity | 80 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 194 | 225.72 | wind | 3 | 90 | > th | dose independent | rect. | 6 | 1 |
| 195 | 225.83 | humidity | 80 | 270 | < th | dose independent | rect. | 4 | 3 |
| 207 | 228.33 | wind | 5 | 10 | > th | dose independent | rect. | 2 | 7 |
| 230 | 231.84 | wind | 5 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 231 | 231.87 | wind | 5 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 238 | 232.10 | radiation | 10 | 10 | < th | dose independent | rect. | 8 | 1 |
| 279 | 235.86 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 1 |
| 303 | 237.27 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 305 | 237.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 309 | 237.61 | atmosphere | 995 | 720 | < th | dose independent | rect. | 18 | 22 |
| 310 | 237.69 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 352 | 237.69 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 395 | 237.72 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 403 | 237.72 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 423 | 238.08 | atmosphere | 995 | 720 | < th | dose independent | sin | 7 | NA |
| 425 | 238.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 427 | 238.33 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 9 |
| 430 | 238.50 | temperature | 20 | 30 | < th | dose independent | sin | 23 | NA |
| 439 | 238.58 | temperature | 20 | 30 | > th | dose independent | sin | 23 | NA |
| 447 | 238.70 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 458 | 238.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 481 | 239.42 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 17 |
| 517 | 239.76 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 520 | 239.80 | humidity | 70 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 531 | 239.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 539 | 240.04 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 23 | 11 |
| 540 | 240.06 | humidity | 80 | 720 | > th | dose independent | sin | 9 | NA |
| 547 | 240.12 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 554 | 240.17 | humidity | 80 | 720 | > th | dose dependent | sin | 9 | NA |
| 560 | 240.23 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 12 |
| 600 | 240.41 | temperature | 20 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 707 | 240.68 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 714 | 240.73 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 780 | 241.08 | atmosphere | 1015 | 720 | > th | dose independent | rect. | 22 | 1 |
| 841 | 241.26 | atmosphere | 995 | 720 | > th | dose independent | sin | 21 | NA |
| 882 | 241.36 | atmosphere | 1010 | 10 | > th | dose dependent | sin | 11 | NA |
| 902 | 241.44 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 923 | 241.49 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 24 | 1 |