BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0512700 Os06g0512700|J065058D18
(135 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G66100.1 | chr1:24605876-24606473 REVERSE LENGTH=135 71 2e-13
AT2G15010.1 | chr2:6484422-6485001 FORWARD LENGTH=136 67 3e-12
AT5G36910.1 | chr5:14562053-14562673 REVERSE LENGTH=135 63 6e-11
AT1G72260.1 | chr1:27198803-27199358 REVERSE LENGTH=135 56 5e-09
>AT1G66100.1 | chr1:24605876-24606473 REVERSE LENGTH=135
Length = 134
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 1 MEGVKSLIMCMLVLGLVLQQEKIQVEAKSCCPSTTARNVYNSCRFAGGSRDTCAKLSGC- 59
MEG K+LI+ +L++ L + Q QV+A CCPS AR YN+C FA GS +C + S C
Sbjct: 1 MEG-KTLIVSVLIMSLFMAQN--QVDANICCPSIQARTFYNACLFAVGSPSSCIRNSSCL 57
Query: 60 KIVDGNCKPPYVHHTLHPEAEESEVLDFCKLGCAXX---XXXXXXXXXXNEEANYAVDRC 116
I + C Y + L + V ++CKLGC +E N V++C
Sbjct: 58 DISESTCPRGYTNDILENTGD--AVTEYCKLGCVSSVCGALTILQNSDASEIVNGEVEKC 115
Query: 117 NDACHRFCTK 126
AC CTK
Sbjct: 116 TMACSTVCTK 125
>AT2G15010.1 | chr2:6484422-6485001 FORWARD LENGTH=136
Length = 135
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MEGVKSLIMCMLVLGLVLQQEKIQVEA-KSCCPSTTARNVYNSCRFAGGSRDTCAKLSGC 59
MEG K++I +LV+GLV+ Q IQVEA K+CCPS + R + C G + C+ SGC
Sbjct: 1 MEG-KTVIFSVLVMGLVISQ--IQVEAQKTCCPSQSTRKEFEDCISEGNLQILCSAESGC 57
Query: 60 K-IVDGNCKPPYVHHTLHPEAEESEVLDFCKLGCAXX---XXXXXXXXXXNEEANYAVDR 115
+ G C + + +L + V +CKLGC + + N AV+R
Sbjct: 58 RDTYVGYCPSGFPYGSLTNSGDVVNV--YCKLGCVSSLCGALTSLQKLDTSGKVNVAVER 115
Query: 116 CNDACHRFCTKEAET 130
C AC CTK ++T
Sbjct: 116 CTKACSTICTKGSKT 130
>AT5G36910.1 | chr5:14562053-14562673 REVERSE LENGTH=135
Length = 134
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 1 MEGVKSLIMCMLVLGLVLQQEKIQVEAKSCCPSTTARNVYNSCRFAGGSRDTCAKLSGCK 60
MEG K++I +L++ LVL Q IQVEAK CCP+ R+VY C + S+ C S CK
Sbjct: 1 MEG-KTVISSLLIMSLVLAQ--IQVEAKICCPTKDDRSVYFVCMLSVSSQFYCLLKSKCK 57
Query: 61 IVDGN-CKPPYVHHTLHPEAEESEVLDFCKLGCAXXXXXXXXXXXXNEEANY---AVDRC 116
C P Y + L + V ++CKLGCA + + AV++C
Sbjct: 58 NTSQTICPPGYTNDILENSGD--AVNEYCKLGCASSVCGALTTLQNFDTSKVLSEAVEQC 115
Query: 117 NDACHRFCT 125
AC CT
Sbjct: 116 TKACSSVCT 124
>AT1G72260.1 | chr1:27198803-27199358 REVERSE LENGTH=135
Length = 134
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 22 KIQVEAKSCCPSTTARNVYNSCRFAGGSRDTCAKLSGCKIVDGNCKPPYVHHTLHPEAEE 81
++QVEAK CCPS ARN Y+ CR S+ C ++SGC+ D C +V+ L A+
Sbjct: 19 QVQVEAKICCPSNQARNGYSVCRIR-FSKGRCMQVSGCQNSD-TCPRGWVNAILENSADA 76
Query: 82 SEVLDFCKLGCAXX---XXXXXXXXXXNEEANYAVDRCNDACHRFCTK 126
+ + CKLGC +E N A ++C C FCTK
Sbjct: 77 TN--EHCKLGCETSVCGAMNTLQNSDASEIVNGASEQCAKGCSIFCTK 122
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,744,977
Number of extensions: 96466
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 4
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)