FiT-DB / Search/ Help/ Sample detail
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Os06g0492000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.28 | 0.356 | 9.85 | 1.86 | 0.378 | -1.57 | -0.918 | 3.78 | 0.525 | 15.3 | 18.77 | 303 | -- | -- |
| 65.17 | 0.376 | 9.93 | 1.17 | 0.356 | -1.74 | -0.0754 | -- | 0.328 | 15.1 | 9.085 | 302 | -- | -- |
| 59.37 | 0.359 | 9.84 | 1.87 | 0.329 | -1.74 | -- | 3.82 | 0.538 | 15.7 | 16.49 | 364 | -- | -- |
| 65.18 | 0.376 | 9.93 | 1.17 | 0.368 | -1.75 | -- | -- | 0.328 | 14.9 | 9.307 | 285 | -- | -- |
| 61.37 | 0.365 | 9.87 | 1.67 | -- | -1.46 | -- | 3.07 | 0.444 | -- | 15.94 | 528 | -- | -- |
| 97.44 | 0.463 | 9.98 | 0.796 | 0.249 | -- | -0.101 | -- | 0.079 | 7.9 | -- | -- | -- | -- |
| 97.46 | 0.462 | 9.98 | 0.793 | 0.25 | -- | -- | -- | 0.0789 | 7.8 | -- | -- | -- | -- |
| 68.26 | 0.385 | 9.94 | 1.13 | -- | -1.46 | -- | -- | 0.294 | -- | -0.8024 | 546 | -- | -- |
| 97.46 | 0.46 | 9.97 | -- | 0.219 | -1.19 | -- | -- | 0.134 | 13.7 | -13.66 | 286 | -- | -- |
| 100.85 | 0.469 | 9.99 | 0.796 | -- | -- | -- | -- | 0.0824 | -- | -- | -- | -- | -- |
| 114.04 | 0.5 | 10 | -- | 0.256 | -- | -- | -- | -0.00941 | 7.58 | -- | -- | -- | -- |
| 98.75 | 0.463 | 9.98 | -- | -- | -1.07 | -- | -- | 0.121 | -- | -4.655 | 463 | -- | -- |
| 117.56 | 0.506 | 10 | -- | -- | -- | -- | -- | -0.0059 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.17 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 2 | 53.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 25 | 55.42 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 38 | 55.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 62 | 56.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 140 | 57.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 145 | 57.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 156 | 57.68 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 173 | 57.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 220 | 58.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 240 | 58.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 249 | 58.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 298 | 58.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 320 | 58.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 327 | 58.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 386 | 58.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 453 | 59.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 454 | 59.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 525 | 59.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 586 | 59.66 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 614 | 59.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 616 | 59.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 671 | 59.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 722 | 60.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 896 | 60.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 897 | 60.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 913 | 60.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 915 | 60.41 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 948 | 60.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 989 | 60.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 995 | 60.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
