BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0492000 Os06g0492000|AK071004
         (151 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68000.1  | chr1:25491346-25492930 FORWARD LENGTH=228          196   3e-51
AT4G38570.1  | chr4:18031420-18033091 REVERSE LENGTH=226          190   2e-49

>AT1G68000.1 | chr1:25491346-25492930 FORWARD LENGTH=228
          Length = 227

 Score =  196 bits (499), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 118/147 (80%), Gaps = 2/147 (1%)

Query: 1   KFNQASTFGAVLDMVTDRVSTACLLALLSQLYRPGLVFLMLLGLDITSHWFQMYSMFLSG 60
           +FNQ STFGAVLDMVTDRVSTACLL +LSQ+YRP LVFL LL LDI SHW QMYS FL+G
Sbjct: 64  RFNQVSTFGAVLDMVTDRVSTACLLVILSQIYRPSLVFLSLLALDIASHWLQMYSTFLAG 123

Query: 61  KTSHKDVKDTGNWLLKLYYGHRPFMAFCCVASEVLYIILFLFADEKSTSLLNVCRCFL-K 119
           K+SHKDVKD+ +WL +LYYG+R FM +CCV+ EVLYIIL L A  +S +LLNV    L +
Sbjct: 124 KSSHKDVKDSTSWLFRLYYGNRIFMCYCCVSCEVLYIILLLIAKNQSENLLNVVVATLTQ 183

Query: 120 GSPLTFFVFISTLVGWALKQVINIIQV 146
            SPL+F + + TL GW++KQ IN+IQ+
Sbjct: 184 ISPLSFLLAL-TLFGWSMKQTINVIQM 209



>AT4G38570.1 | chr4:18031420-18033091 REVERSE LENGTH=226
          Length = 225

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 112/146 (76%)

Query: 1   KFNQASTFGAVLDMVTDRVSTACLLALLSQLYRPGLVFLMLLGLDITSHWFQMYSMFLSG 60
           KFNQ STFGAVLDMVTDRVSTACLL +LSQ+YRP LVFL LL LDI SHW QMYS FLSG
Sbjct: 61  KFNQVSTFGAVLDMVTDRVSTACLLVILSQIYRPSLVFLSLLALDIASHWLQMYSTFLSG 120

Query: 61  KTSHKDVKDTGNWLLKLYYGHRPFMAFCCVASEVLYIILFLFADEKSTSLLNVCRCFLKG 120
           KTSHKDVKD+ +WL +LYYG+R FM +CCV+ EVLYIIL L A  ++ +L+NV    L  
Sbjct: 121 KTSHKDVKDSTSWLFRLYYGNRMFMGYCCVSCEVLYIILLLIATNQTENLMNVVVKSLMQ 180

Query: 121 SPLTFFVFISTLVGWALKQVINIIQV 146
                 +   ++ GW++KQ+IN+IQ+
Sbjct: 181 ISPLSLLLALSIFGWSIKQIINVIQM 206



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,057,455
Number of extensions: 114462
Number of successful extensions: 289
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 107 (45.8 bits)