Os06g0491800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposable element Ac.
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Os06g0491800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposable element Ac.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.26 | 0.441 | 8.99 | -1.12 | 0.0462 | 1.36 | 0.612 | 0.879 | -0.0514 | 18.3 | 20.8 | 1407 | -- | -- |
| 89.11 | 0.44 | 9.03 | -1.27 | 0.0333 | 1.21 | 0.644 | -- | -0.122 | 18.8 | 21.2 | 1442 | -- | -- |
| 89.12 | 0.44 | 8.99 | -1.14 | 0.0596 | 1.37 | -- | 0.859 | -0.0527 | 16.1 | 20.8 | 1406 | -- | -- |
| 90.13 | 0.442 | 9.02 | -1.29 | 0.0579 | 1.21 | -- | -- | -0.105 | 16.5 | 21.28 | 1427 | -- | -- |
| 89.31 | 0.44 | 8.99 | -1.14 | -- | 1.37 | -- | 0.864 | -0.0525 | -- | 20.81 | 1406 | -- | -- |
| 128.3 | 0.531 | 8.95 | -0.769 | 0.0264 | -- | 0.76 | -- | 0.221 | 18.4 | -- | -- | -- | -- |
| 129.74 | 0.533 | 8.95 | -0.78 | 0.0305 | -- | -- | -- | 0.223 | 19.5 | -- | -- | -- | -- |
| 90.29 | 0.443 | 9.02 | -1.29 | -- | 1.21 | -- | -- | -0.106 | -- | 21.28 | 1446 | -- | -- |
| 122.93 | 0.516 | 8.98 | -- | 0.0968 | 0.732 | -- | -- | 0.0856 | 16.1 | 22.3 | 1263 | -- | -- |
| 129.79 | 0.532 | 8.94 | -0.78 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 145.77 | 0.565 | 8.93 | -- | 0.0398 | -- | -- | -- | 0.31 | 18.1 | -- | -- | -- | -- |
| 123.43 | 0.517 | 8.97 | -- | -- | 0.715 | -- | -- | 0.0893 | -- | 22.3 | 1263 | -- | -- |
| 145.85 | 0.564 | 8.92 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 4 | 90.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 31 | 90.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 50 | 90.69 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 84 | 90.95 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 92 | 90.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 111 | 91.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 123 | 91.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 162 | 91.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 204 | 91.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 207 | 91.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 214 | 91.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 216 | 91.38 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 221 | 91.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 230 | 91.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 255 | 91.50 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 256 | 91.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 307 | 91.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 430 | 91.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 449 | 91.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 461 | 91.98 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 462 | 91.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 540 | 92.20 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 573 | 92.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 574 | 92.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 587 | 92.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 588 | 92.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 620 | 92.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 635 | 92.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 681 | 92.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 720 | 92.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 780 | 92.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 810 | 93.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 818 | 93.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 877 | 93.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 879 | 93.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 887 | 93.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 911 | 93.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 953 | 93.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |