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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0477500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.83 (0.0404) R2 : 0.54
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.55 (0.101) R2dC : 0.234 R2C : 0.232
β3 : 2.1 (0.115) R2dE : 0.37 R2E : 0.274
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.449 (0.093) R2dN8 : 0.0422 R2N8 : -0.0751
σ : 0.736
deviance : 249.88
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_____
C
peak time of C : 7.43
E
wheather : temperature
threshold : 23.3
memory length : 8304
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.87 0.731 4.96 -1.68 1.57 2.39 -0.456 -5.34 -0.513 7.46 26 5732 -- --
243.56 0.727 4.87 -0.894 1.56 2.4 -0.549 -- -0.611 7.54 22.2 9590 -- --
242.34 0.725 4.96 -1.69 1.57 2.39 -- -5.31 -0.519 7.41 26.04 5780 -- --
242.2 0.725 4.85 -0.696 1.58 2.28 -- -- -0.593 7.37 22.6 9108 -- --
368.04 0.894 4.97 -1.6 -- 2.38 -- -5.36 -0.396 -- 26.8 5755 -- --
389.42 0.925 4.64 0.752 1.56 -- -0.475 -- 0.386 7.24 -- -- -- --
390.03 0.925 4.64 0.742 1.56 -- -- -- 0.387 7.23 -- -- -- --
368.98 0.895 4.92 -1.07 -- 2.46 -- -- -0.65 -- 22.67 10014 -- --
249.88 0.736 4.83 -- 1.55 2.1 -- -- -0.449 7.43 23.3 8304 -- --
519.31 1.06 4.68 0.77 -- -- -- -- 0.414 -- -- -- -- --
404.55 0.941 4.66 -- 1.57 -- -- -- 0.305 7.2 -- -- -- --
373.24 0.9 4.85 -- -- 1.99 -- -- -0.312 -- 23 5745 -- --
534.97 1.08 4.7 -- -- -- -- -- 0.329 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.23 humidity 90 43200 > th dose independent rect. 22 2
6 235.47 humidity 90 43200 > th dose dependent rect. 20 5
8 235.56 radiation 1 43200 < th dose dependent rect. 2 3
10 235.68 humidity 90 43200 > th dose dependent rect. 22 2
19 235.96 radiation 1 43200 < th dose dependent rect. 18 1
21 235.98 radiation 1 43200 < th dose dependent rect. 18 4
26 236.03 temperature 25 4320 > th dose independent rect. 10 1
30 236.08 radiation 1 43200 < th dose dependent rect. 18 10
37 236.30 radiation 1 43200 < th dose dependent rect. 21 8
42 236.47 humidity 90 43200 > th dose dependent rect. 17 17
45 236.51 humidity 90 43200 > th dose dependent rect. 19 15
51 236.55 temperature 25 4320 > th dose independent rect. 8 4
58 236.61 humidity 80 43200 > th dose independent rect. 12 1
74 236.73 temperature 25 4320 < th dose independent rect. 8 4
89 236.86 humidity 90 43200 > th dose dependent sin 14 NA
110 237.00 humidity 90 43200 > th dose dependent rect. 11 20
112 237.01 humidity 90 43200 > th dose dependent rect. 9 21
178 237.40 humidity 80 43200 < th dose independent rect. 12 2
200 237.57 humidity 90 43200 > th dose dependent no NA NA
201 237.59 temperature 25 4320 < th dose independent rect. 10 1
229 237.91 humidity 90 43200 > th dose dependent rect. 5 23
239 238.03 humidity 90 43200 > th dose dependent rect. 2 23
267 238.32 humidity 90 43200 > th dose dependent rect. 5 1
304 238.73 radiation 10 43200 < th dose independent rect. 5 2
317 238.87 humidity 90 43200 > th dose dependent rect. 2 8
320 238.88 humidity 90 43200 < th dose independent rect. 17 8
329 238.95 humidity 90 43200 > th dose dependent rect. 3 5
332 238.97 radiation 10 43200 < th dose independent rect. 1 6
333 238.97 radiation 10 43200 < th dose independent rect. 22 9
334 238.97 radiation 10 43200 < th dose independent rect. 20 11
345 239.05 radiation 1 43200 > th dose independent rect. 18 1
355 239.05 humidity 90 43200 > th dose dependent rect. 4 3
365 239.10 humidity 90 43200 > th dose independent sin 16 NA
374 239.26 radiation 1 43200 < th dose dependent rect. 6 4
397 239.56 radiation 1 43200 > th dose independent rect. 9 1
398 239.58 humidity 90 43200 > th dose independent rect. 16 19
411 239.74 radiation 1 43200 < th dose independent rect. 9 1
453 240.01 radiation 1 43200 < th dose dependent rect. 18 20
457 240.05 radiation 1 43200 < th dose independent rect. 18 10
459 240.06 radiation 1 43200 < th dose independent rect. 18 2
461 240.07 radiation 1 43200 < th dose independent rect. 18 4
465 240.08 radiation 1 43200 < th dose independent rect. 18 7
491 240.34 radiation 10 43200 < th dose independent rect. 17 15
509 240.47 radiation 1 43200 < th dose dependent rect. 6 23
510 240.48 temperature 20 14400 < th dose independent rect. 4 2
512 240.50 radiation 1 43200 < th dose independent rect. 8 4
518 240.53 radiation 1 43200 > th dose independent rect. 8 4
541 240.77 humidity 90 43200 > th dose independent rect. 8 22
546 240.79 humidity 90 43200 > th dose independent rect. 9 19
551 240.84 temperature 25 14400 < th dose independent rect. 17 2
584 241.05 temperature 20 14400 > th dose independent rect. 4 1
591 241.09 radiation 1 43200 < th dose dependent rect. 9 3
601 241.13 temperature 25 14400 > th dose independent rect. 17 2
603 241.13 radiation 1 43200 < th dose independent rect. 7 7
609 241.16 radiation 1 43200 > th dose independent rect. 7 7
617 241.19 radiation 1 43200 < th dose dependent rect. 6 13
658 241.42 humidity 90 43200 > th dose independent no NA NA
669 241.46 humidity 90 43200 > th dose independent rect. 2 23
715 241.65 radiation 1 43200 < th dose dependent sin 13 NA
721 241.69 temperature 20 14400 > th dose dependent rect. 21 2
736 241.73 radiation 1 43200 < th dose dependent rect. 9 1
740 241.75 humidity 90 43200 < th dose independent rect. 18 1
763 241.88 radiation 1 43200 < th dose dependent rect. 13 16
783 241.97 radiation 1 43200 < th dose dependent rect. 12 21
814 242.09 radiation 1 43200 < th dose dependent rect. 12 23
826 242.16 humidity 90 43200 < th dose independent rect. 22 1
835 242.20 humidity 90 43200 < th dose independent rect. 21 3
844 242.25 radiation 1 43200 > th dose dependent rect. 18 1
877 242.36 temperature 15 14400 > th dose dependent rect. 2 1
897 242.42 radiation 1 43200 < th dose dependent rect. 10 23
907 242.45 radiation 1 43200 < th dose dependent rect. 4 15
915 242.45 radiation 1 43200 < th dose dependent rect. 2 20
948 242.49 radiation 1 43200 < th dose dependent rect. 21 22
952 242.50 radiation 1 43200 < th dose dependent no NA NA