BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0477500 Os06g0477500|Os06g0477500
         (515 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1  | chr4:12129485-12134086 FORWARD LENGTH=1263         226   2e-59
ATMG00810.1  | chrM:227709-228431 REVERSE LENGTH=241              167   9e-42
ATMG00240.1  | chrM:68918-69253 REVERSE LENGTH=112                 66   3e-11

>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
          Length = 1262

 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/291 (41%), Positives = 172/291 (59%), Gaps = 1/291 (0%)

Query: 177 EHAVYVRGNTSARLLVGVYVDDLIITGTKEDEIVRFKGEMKALFKMSDLGLLSFYLGIEV 236
           +H  +++   +  L V VYVDD+II    +  +   K ++K+ FK+ DLG L ++LG+E+
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324

Query: 237 EQVAGSIRLSQAAYARRILERAGMLGCNPSATPMEQRLKLSKTSAAAPVNPNWYRGIVGC 296
            + A  I + Q  YA  +L+  G+LGC PS+ PM+  +  S  S    V+   YR ++G 
Sbjct: 325 ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGR 384

Query: 297 LRYLVHTRPDIAFSVGYVSRFMEAPTTEHEAAVKRILRYIAGTTEFGCHYHQSSSPVQLV 356
           L YL  TR DI+F+V  +S+F EAP   H+ AV +IL YI GT   G  Y  S + +QL 
Sbjct: 385 LMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFY-SSQAEMQLQ 443

Query: 357 GYSDADMAGDPDTRKSTTGVVFFLGTSPVSWQSVKQKVVALSSCEAEYIAATTAACQGVW 416
            +SDA      DTR+ST G   FLGTS +SW+S KQ+VV+ SS EAEY A + A  + +W
Sbjct: 444 VFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMW 503

Query: 417 LSQLLGEVNQEEPDAFKLLIDNKSAIALSKNPVFHERSKHIATRYHYIRER 467
           L+Q   E+         L  DN +AI ++ N VFHER+KHI +  H +RER
Sbjct: 504 LAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554



>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
          Length = 240

 Score =  167 bits (424), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 2/225 (0%)

Query: 194 VYVDDLIITGTKEDEIVRFKGEMKALFKMSDLGLLSFYLGIEVEQVAGSIRLSQAAYARR 253
           +YVDD+++TG+    +     ++ + F M DLG + ++LGI+++     + LSQ  YA +
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 254 ILERAGMLGCNPSATPMEQRLKLSKTSAAAPVNPNWYRGIVGCLRYLVHTRPDIAFSVGY 313
           IL  AGML C P +TP+  +L  S ++A  P +P+ +R IVG L+YL  TRPDI+++V  
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNI 123

Query: 314 VSRFMEAPTTEHEAAVKRILRYIAGTTEFGCHYHQSSSPVQLVGYSDADMAGDPDTRKST 373
           V + M  PT      +KR+LRY+ GT   G + H++S  + +  + D+D AG   TR+ST
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK-LNVQAFCDSDWAGCTSTRRST 182

Query: 374 TGVVFFLGTSPVSWQSVKQKVVALSSCEAEYIAATTAACQGVWLS 418
           TG   FLG + +SW + +Q  V+ SS E EY A    A +  W S
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227



>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
          Length = 111

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 6/88 (6%)

Query: 299 YLVHTRPDIAFSVGYVSRFMEAPTTEHEAAVKRILRYIAGTTEFGCHYHQSSSPVQLVGY 358
           YL  TRPD+ F+V  +S+F  A  T    AV ++L Y+ GT   G  Y  ++S +QL  +
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY-SATSDLQLKAF 60

Query: 359 SDADMAGDPDTRKSTTGV-----VFFLG 381
           +D+D A  PDTR+S TG      ++FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,921,162
Number of extensions: 324878
Number of successful extensions: 717
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 3
Length of query: 515
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,282,721
Effective search space: 3412481052
Effective search space used: 3412481052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)