Os06g0354500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC 1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3).
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Os06g0354500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC 1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.39 | 0.327 | 10.7 | 0.73 | 1.05 | -1.09 | -0.496 | 0.34 | 0.547 | 19 | 1.5 | 1412 | -- | -- |
| 48.53 | 0.324 | 10.7 | 0.713 | 1.03 | -1.11 | -0.496 | -- | 0.543 | 19.1 | 1.48 | 1406 | -- | -- |
| 48.85 | 0.326 | 10.7 | 0.746 | 1.05 | -1.04 | -- | 0.544 | 0.547 | 19 | 1.67 | 1412 | -- | -- |
| 49.13 | 0.326 | 10.7 | 0.697 | 1.03 | -1.12 | -- | -- | 0.539 | 19.1 | 1.47 | 1404 | -- | -- |
| 102.03 | 0.47 | 10.7 | 0.722 | -- | -1.16 | -- | 0.56 | 0.544 | -- | 1.76 | 1463 | -- | -- |
| 66.71 | 0.383 | 10.7 | 0.494 | 1.04 | -- | -0.466 | -- | 0.384 | 18.7 | -- | -- | -- | -- |
| 67.26 | 0.384 | 10.7 | 0.502 | 1.04 | -- | -- | -- | 0.383 | 18.7 | -- | -- | -- | -- |
| 102.26 | 0.471 | 10.7 | 0.653 | -- | -1.18 | -- | -- | 0.513 | -- | 1.66 | 1461 | -- | -- |
| 60.79 | 0.363 | 10.7 | -- | 1.02 | -0.903 | -- | -- | 0.443 | 19 | 1.671 | 1417 | -- | -- |
| 123.27 | 0.519 | 10.7 | 0.478 | -- | -- | -- | -- | 0.362 | -- | -- | -- | -- | -- |
| 73.9 | 0.402 | 10.7 | -- | 1.03 | -- | -- | -- | 0.327 | 18.7 | -- | -- | -- | -- |
| 113.24 | 0.496 | 10.7 | -- | -- | -1.02 | -- | -- | 0.439 | -- | 1.64 | 1463 | -- | -- |
| 129.3 | 0.531 | 10.7 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.98 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 2 | 46.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 4 | 47.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 19 | 47.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 28 | 47.20 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 18 |
| 30 | 47.25 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 66 | 47.80 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 69 | 47.83 | humidity | 80 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 83 | 47.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 111 | 48.21 | humidity | 70 | 1440 | > th | dose dependent | sin | 3 | NA |
| 256 | 48.96 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 260 | 49.01 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 261 | 49.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 337 | 49.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 338 | 49.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 350 | 49.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 354 | 49.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 389 | 49.59 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 395 | 49.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 406 | 49.70 | radiation | 1 | 1440 | > th | dose independent | sin | 1 | NA |
| 425 | 49.77 | radiation | 1 | 1440 | < th | dose independent | sin | 1 | NA |
| 429 | 49.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 435 | 49.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 438 | 49.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 447 | 49.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 461 | 49.85 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 466 | 49.89 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 488 | 49.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 499 | 49.97 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 505 | 49.99 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 577 | 50.04 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 595 | 50.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 599 | 50.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 600 | 50.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 629 | 50.10 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 650 | 50.11 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 15 |
| 693 | 50.16 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 701 | 50.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 706 | 50.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 770 | 50.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 802 | 50.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 807 | 50.33 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 813 | 50.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 839 | 50.40 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 844 | 50.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 868 | 50.45 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 870 | 50.45 | humidity | 60 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 913 | 50.50 | humidity | 90 | 720 | > th | dose independent | rect. | 4 | 20 |
| 932 | 50.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 14 |