Os06g0332500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0332500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.84 | 0.325 | 8.16 | 0.603 | 0.5 | -1.45 | 0.606 | 0.849 | -0.0635 | 14.7 | 29.5 | 17 | -- | -- |
| 48.46 | 0.324 | 8.15 | 0.735 | 0.498 | -1.48 | 0.314 | -- | -0.0361 | 14.6 | 29.12 | 25 | -- | -- |
| 48.81 | 0.325 | 8.16 | 0.66 | 0.508 | -1.45 | -- | 0.542 | -0.0646 | 14.5 | 29.44 | 27 | -- | -- |
| 48.79 | 0.325 | 8.14 | 0.752 | 0.493 | -1.48 | -- | -- | -0.0313 | 14.6 | 29.08 | 25 | -- | -- |
| 58.47 | 0.358 | 8.17 | 0.606 | -- | -1.94 | -- | 0.229 | -0.119 | -- | 30.1 | 25 | -- | -- |
| 77.87 | 0.414 | 8.08 | 1.1 | 0.982 | -- | 0.481 | -- | 0.271 | 14.5 | -- | -- | -- | -- |
| 78.7 | 0.415 | 8.07 | 1.11 | 0.982 | -- | -- | -- | 0.274 | 14.5 | -- | -- | -- | -- |
| 57.99 | 0.355 | 8.16 | 0.635 | -- | -1.95 | -- | -- | -0.123 | -- | 29.7 | 22 | -- | -- |
| 62.21 | 0.367 | 8.18 | -- | 0.381 | -1.78 | -- | -- | -0.174 | 14.4 | 28.85 | 32 | -- | -- |
| 135.59 | 0.544 | 8.08 | 1.07 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 111.38 | 0.494 | 8.1 | -- | 0.961 | -- | -- | -- | 0.15 | 14.4 | -- | -- | -- | -- |
| 67.67 | 0.383 | 8.19 | -- | -- | -2.13 | -- | -- | -0.227 | -- | 29.56 | 25 | -- | -- |
| 165.9 | 0.601 | 8.11 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 46.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 5 | 47.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 7 | 47.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 10 | 47.94 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 11 | 48.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 48.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 19 | 48.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 21 | 48.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 23 | 48.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 26 | 48.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 27 | 48.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 31 | 48.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 33 | 48.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 34 | 48.93 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 36 | 49.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 40 | 49.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 45 | 49.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 75 | 50.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 90 | 50.56 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 91 | 50.57 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 96 | 50.66 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 111 | 50.78 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 14 |
| 129 | 50.85 | temperature | 20 | 4320 | < th | dose dependent | sin | 11 | NA |
| 150 | 50.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 154 | 50.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 159 | 50.94 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 161 | 50.94 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 8 |
| 174 | 50.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 189 | 51.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 13 |
| 191 | 51.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 209 | 51.04 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 284 | 51.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 13 |
| 341 | 51.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 396 | 51.33 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 428 | 51.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 434 | 51.38 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 457 | 51.41 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 459 | 51.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 472 | 51.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 473 | 51.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 17 |
| 474 | 51.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 17 |
| 486 | 51.45 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 498 | 51.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 507 | 51.47 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 523 | 51.49 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 524 | 51.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 763 | 51.71 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 775 | 51.72 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 797 | 51.74 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |