BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0332500 Os06g0332500|AK121262
         (90 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55205.2  | chr1:20594584-20595094 FORWARD LENGTH=104           53   4e-08
AT4G39300.1  | chr4:18286835-18287823 FORWARD LENGTH=97            46   5e-06

>AT1G55205.2 | chr1:20594584-20595094 FORWARD LENGTH=104
          Length = 103

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 31/35 (88%)

Query: 54 LSVMPLHSAVASARLRSAISPESQSWGIVPQGNSM 88
          LS++PLHSA+ASARL S++S ES+SWG+VPQG S 
Sbjct: 61 LSMLPLHSAIASARLISSLSVESKSWGLVPQGQSF 95



>AT4G39300.1 | chr4:18286835-18287823 FORWARD LENGTH=97
          Length = 96

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query: 51 GGLLSVMPLHSAVASARLRSAISPESQSWGIVPQGNSMPL 90
          G + +++PLHSAVASARLRS+I+ +S  W ++ QG + PL
Sbjct: 57 GSVETMIPLHSAVASARLRSSIAADSSCWSLLSQGLATPL 96



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.125    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,060,504
Number of extensions: 19419
Number of successful extensions: 41
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 11,106,569
Length adjustment: 61
Effective length of query: 29
Effective length of database: 9,434,193
Effective search space: 273591597
Effective search space used: 273591597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)