Os06g0331300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0331300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.92 | 0.175 | 9.9 | 0.788 | 0.154 | -0.298 | -0.266 | 2.3 | 0.286 | 3.67 | 24.77 | 1183 | -- | -- |
| 15.75 | 0.185 | 9.96 | 0.278 | 0.158 | -0.0737 | -0.123 | -- | 0.176 | 4.32 | 22.32 | 29880 | -- | -- |
| 14.07 | 0.175 | 9.9 | 0.777 | 0.143 | -0.297 | -- | 2.32 | 0.27 | 4.03 | 25.53 | 1185 | -- | -- |
| 15.78 | 0.185 | 9.96 | 0.274 | 0.145 | -0.0783 | -- | -- | 0.171 | 4.63 | 22.14 | 29751 | -- | -- |
| 15.1 | 0.181 | 9.89 | 0.913 | -- | -0.359 | -- | 3.15 | 0.267 | -- | 26.91 | 1208 | -- | -- |
| 15.88 | 0.187 | 9.97 | 0.201 | 0.145 | -- | -0.144 | -- | 0.13 | 4.56 | -- | -- | -- | -- |
| 15.94 | 0.187 | 9.97 | 0.202 | 0.144 | -- | -- | -- | 0.131 | 4.66 | -- | -- | -- | -- |
| 16.29 | 0.188 | 9.97 | 0.24 | -- | -0.164 | -- | -- | 0.159 | -- | 22.41 | 304 | -- | -- |
| 16.47 | 0.189 | 9.99 | -- | 0.144 | 0.108 | -- | -- | 0.0679 | 4.71 | 21.55 | 47520 | -- | -- |
| 17.04 | 0.193 | 9.97 | 0.207 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 17.01 | 0.193 | 9.98 | -- | 0.148 | -- | -- | -- | 0.109 | 4.62 | -- | -- | -- | -- |
| 17.56 | 0.195 | 9.99 | -- | -- | 0.115 | -- | -- | 0.0685 | -- | 21.6 | 47520 | -- | -- |
| 18.17 | 0.199 | 9.98 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.59 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 9 |
| 2 | 13.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 13.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 14 | 13.62 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 22 | 13.64 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 31 | 13.68 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 16 |
| 35 | 13.70 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 8 |
| 50 | 13.74 | temperature | 25 | 720 | > th | dose independent | sin | 13 | NA |
| 56 | 13.76 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 11 |
| 101 | 13.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 103 | 13.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 141 | 13.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 185 | 13.95 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 18 |
| 236 | 13.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 275 | 14.02 | humidity | 90 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 276 | 14.03 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 298 | 14.05 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 414 | 14.12 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 15 |
| 423 | 14.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 453 | 14.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 460 | 14.14 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 20 |
| 557 | 14.19 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 575 | 14.20 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 579 | 14.20 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 602 | 14.22 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 617 | 14.23 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 15 |
| 647 | 14.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 672 | 14.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 693 | 14.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 695 | 14.26 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 709 | 14.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 712 | 14.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 762 | 14.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 795 | 14.29 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 825 | 14.30 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 878 | 14.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 880 | 14.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 904 | 14.31 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 919 | 14.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 942 | 14.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 944 | 14.32 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 945 | 14.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 970 | 14.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 996 | 14.33 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 9 |