BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0331300 Os06g0331300|AK073106
         (444 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11270.1  | chr4:6854461-6859490 FORWARD LENGTH=1447           487   e-138

>AT4G11270.1 | chr4:6854461-6859490 FORWARD LENGTH=1447
          Length = 1446

 Score =  487 bits (1253), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/413 (58%), Positives = 317/413 (76%), Gaps = 4/413 (0%)

Query: 32   DTSEISSWLESFENQEWLSWIGGTSQDAVASNIIVAAALVVWYPSIVKPKLAHLVVNQLI 91
            + SEI SWLESFE Q+W+S +GGTSQDA+A++IIVAAAL +WYPS+VKP LA LVV++L+
Sbjct: 1038 EESEILSWLESFEMQDWISCVGGTSQDAMAAHIIVAAALSIWYPSLVKPGLAMLVVHKLL 1097

Query: 92   KLVMSMNDRYSSTAAELLAEGMESTWKVCLGTDMTHFLSDVLFQIECLSSAPSNNAVYKT 151
             LVM+M+++YSSTAAELL+EGME+TWK  +G D+   +SD+ FQIEC+SS+     V   
Sbjct: 1098 NLVMAMSEKYSSTAAELLSEGMETTWKTWIGPDIPRIVSDIFFQIECVSSSVGAYQV--- 1154

Query: 152  AVAVTMREALVGTLLPSLAMADIVGFFGVIQSQIWATSSDSPVHVISLKTLIRVVRGSPK 211
             V  +++E LV  LLPSLAMAD++GF  +I+SQIW+T+SDSPVHV+SL+TLIR++R +P+
Sbjct: 1155 -VPSSIKETLVEVLLPSLAMADVLGFLSIIESQIWSTASDSPVHVVSLRTLIRIIRAAPR 1213

Query: 212  ALAPYLDKAISYVLHTMDPSNLIMRKACIINSMMALREIARVFPMVALNESMTRLAVGDA 271
             L  +L+KA+++VL TMDPSN +MRK C+  SM  LRE+ RVFPMV LN+S TRLA+GD 
Sbjct: 1214 NLVLHLEKAVNFVLQTMDPSNTVMRKTCLQTSMATLREVVRVFPMVILNDSSTRLAIGDV 1273

Query: 272  IGEIHNATIRVYDIESVTKIRILDASGPPGLPSLLDGSSNTTATILITALSFSLEGEGLV 331
            I EI+NA I +YD+ S+TKIR+LDASGPPGLP+ L G+S +  T  I+ALSFS +GEGLV
Sbjct: 1274 ITEINNACIHIYDMRSMTKIRVLDASGPPGLPNFLRGASESAVTTAISALSFSPDGEGLV 1333

Query: 332  AFSENGLMIRWWSLGNAWWERLSRSLTPIQCTKLIYVPPWEGFSPNSARLSIISSILGHD 391
            AFSENGLMIRWWSLG+ WWE+LS+SLTPIQCTKLI++ PW+GFS +S+R S+ISSI   +
Sbjct: 1334 AFSENGLMIRWWSLGSVWWEKLSQSLTPIQCTKLIFIHPWDGFSSSSSRTSVISSISNDE 1393

Query: 392  KHQNSETKTRELDEAXXXXXXXXXXXXSYRLQWVSGKTIKLTRHGQELGTFQL 444
            +    +   + +               SYRL+W S + + LTRH  ELGT  L
Sbjct: 1394 QELPLQETAKNISHVERLKQLVQHLDLSYRLEWASERKVVLTRHNVELGTCLL 1446



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,936,300
Number of extensions: 341681
Number of successful extensions: 915
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 342
Effective length of database: 8,310,137
Effective search space: 2842066854
Effective search space used: 2842066854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)