Os06g0329200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os06g0329200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.77 | 0.501 | 9.14 | -0.683 | 1.87 | -1.72 | 0.653 | 3.53 | -0.0613 | 5.82 | 23.09 | 334 | -- | -- |
| 118.62 | 0.507 | 9.21 | -1.29 | 1.94 | -1.41 | -0.117 | -- | -0.246 | 5.63 | 23.17 | 396 | -- | -- |
| 114.64 | 0.499 | 9.15 | -0.734 | 1.84 | -1.77 | -- | 3.2 | -0.0763 | 5.81 | 23.2 | 333 | -- | -- |
| 118.63 | 0.507 | 9.21 | -1.28 | 1.93 | -1.4 | -- | -- | -0.244 | 5.69 | 23.1 | 369 | -- | -- |
| 214.54 | 0.682 | 9.08 | 0.0929 | -- | -3.54 | -- | 7.66 | 0.184 | -- | 24.41 | 370 | -- | -- |
| 153.83 | 0.581 | 9.25 | -1.58 | 2.56 | -- | 0.439 | -- | -0.446 | 5.68 | -- | -- | -- | -- |
| 154.29 | 0.582 | 9.25 | -1.57 | 2.56 | -- | -- | -- | -0.447 | 5.67 | -- | -- | -- | -- |
| 233.35 | 0.711 | 9.21 | -0.926 | -- | -3.16 | -- | -- | -0.0922 | -- | 24.2 | 339 | -- | -- |
| 160.05 | 0.589 | 9.18 | -- | 1.88 | -1.68 | -- | -- | -0.0771 | 5.31 | 22.74 | 525 | -- | -- |
| 493.96 | 1.04 | 9.28 | -1.49 | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
| 219.53 | 0.693 | 9.21 | -- | 2.53 | -- | -- | -- | -0.272 | 5.69 | -- | -- | -- | -- |
| 256.91 | 0.747 | 9.19 | -- | -- | -3.15 | -- | -- | 0.0375 | -- | 24.2 | 372 | -- | -- |
| 552.66 | 1.1 | 9.25 | -- | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.01 | radiation | 30 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 5 | 113.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 6 | 113.38 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 7 | 113.38 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 10 | 113.39 | radiation | 20 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 14 | 113.39 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 15 | 113.39 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 52 | 113.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 60 | 113.82 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 61 | 113.86 | radiation | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 64 | 113.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 106 | 114.22 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 108 | 114.23 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 110 | 114.24 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 113 | 114.24 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 118 | 114.24 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 125 | 114.25 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 192 | 114.55 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 254 | 114.77 | radiation | 40 | 43200 | < th | dose independent | sin | 9 | NA |
| 399 | 115.29 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 408 | 115.37 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 448 | 115.48 | radiation | 20 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 453 | 115.49 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 514 | 115.54 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 539 | 115.57 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 550 | 115.57 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 554 | 115.57 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 561 | 115.58 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 632 | 115.58 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 678 | 115.61 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 832 | 115.81 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |
| 982 | 115.84 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 7 |