Os06g0318700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os06g0318700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.7 | 0.224 | 10.8 | -0.636 | 0.822 | -0.743 | 0.832 | 0.309 | -0.151 | 1.6 | 19.75 | 3599 | -- | -- |
| 22.75 | 0.222 | 10.8 | -0.702 | 0.808 | -0.76 | 0.835 | -- | -0.165 | 1.59 | 19.02 | 3560 | -- | -- |
| 25.18 | 0.236 | 10.8 | -0.985 | 0.435 | -0.891 | -- | -0.711 | -0.212 | 1.42 | 19.6 | 3481 | -- | -- |
| 25.47 | 0.235 | 10.8 | -0.741 | 0.807 | -0.709 | -- | -- | -0.174 | 1.81 | 19.17 | 3124 | -- | -- |
| 32.96 | 0.269 | 10.8 | -0.862 | -- | -1.31 | -- | -0.561 | -0.129 | -- | 19.6 | 3481 | -- | -- |
| 36.09 | 0.282 | 10.8 | -1.03 | 0.764 | -- | 0.812 | -- | -0.33 | 1.77 | -- | -- | -- | -- |
| 38.66 | 0.291 | 10.8 | -1.06 | 0.765 | -- | -- | -- | -0.335 | 1.85 | -- | -- | -- | -- |
| 33.28 | 0.27 | 10.7 | -0.76 | -- | -1.35 | -- | -- | -0.0994 | -- | 19.17 | 3124 | -- | -- |
| 27.45 | 0.244 | 10.7 | -- | 0.823 | -0.98 | -- | -- | 0.102 | 1.75 | 15.42 | 41493 | -- | -- |
| 74.12 | 0.402 | 10.8 | -1.03 | -- | -- | -- | -- | -0.317 | -- | -- | -- | -- | -- |
| 68.26 | 0.386 | 10.8 | -- | 0.746 | -- | -- | -- | -0.217 | 1.81 | -- | -- | -- | -- |
| 47.84 | 0.323 | 10.7 | -- | -- | -1.52 | -- | -- | 0.00858 | -- | 19.17 | 3124 | -- | -- |
| 102.01 | 0.471 | 10.8 | -- | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.58 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 2 | 20.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 21 | 21.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 29 | 21.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 35 | 21.78 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 49 | 21.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 63 | 21.88 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 64 | 21.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 67 | 21.91 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 70 | 21.93 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 71 | 21.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 94 | 21.97 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 108 | 21.97 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 119 | 22.00 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 146 | 22.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 187 | 22.15 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 189 | 22.15 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 196 | 22.17 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 215 | 22.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 220 | 22.20 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 221 | 22.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 227 | 22.22 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 254 | 22.23 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 265 | 22.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 282 | 22.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 475 | 22.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 538 | 22.56 | temperature | 20 | 4320 | > th | dose dependent | sin | 6 | NA |
| 557 | 22.57 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 621 | 22.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 680 | 22.66 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 682 | 22.66 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 729 | 22.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 748 | 22.69 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 752 | 22.69 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 783 | 22.70 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 981 | 22.80 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 3 |