BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0318700 Os06g0318700|AK120250
         (368 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08505.2  | chr3:2580603-2582043 REVERSE LENGTH=324            428   e-120

>AT3G08505.2 | chr3:2580603-2582043 REVERSE LENGTH=324
          Length = 323

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/366 (59%), Positives = 254/366 (69%), Gaps = 45/366 (12%)

Query: 3   TKRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGSRCRYDHVKVSRNXX 62
           + R+LCKFF+HG+CLKGE CEFSHD  D PNNVCTFYQK  C YGSRCRYDHV+ + N  
Sbjct: 2   SDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNL- 60

Query: 63  XXXXXXXXXXXXXXXXLQPLSFGRPHHVGYQADSSNPRQQISMDVLAHSGSKPVWRNDFQ 122
                             PLS          +DS +  + IS     H           Q
Sbjct: 61  ------------------PLS----------SDSESLDRSISTTPSRH----------LQ 82

Query: 123 HESVLEDGIDWSISPTVQNQTTLSPADLPICSFAAGGNCPYGEECPQMHGDLCTTCGKMC 182
            +    DG   S      N   + P + PICSFAA G+CP G +CP MHGDLC TCGK C
Sbjct: 83  QQGDNNDGDKSS------NVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKC 136

Query: 183 LHPYRPDEREEHTKLCEKNHKRLESLKRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 242
           LHP+RP+EREEHTK CEK  K +E+LK+SQ+IECSVCLDR+LSK T  ERKFGLL+ECDH
Sbjct: 137 LHPFRPEEREEHTKECEKKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDH 196

Query: 243 PFCISCIRNWRNNSPTSGMDVNSALRACPICRKLSYYVIPSVLWYFSKEEKLEIIDNYKA 302
           PFCI CIRNWR+++P SGMDVNS LRACPICRKLSY+V+PSV+WY S EEK EIID YKA
Sbjct: 197 PFCIQCIRNWRSSAPVSGMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKA 256

Query: 303 KLKSIDCKYFDFGTGTCPFGSSCFYKHAYRDGRLEEVILRHLDADDGSTVIAKNIRLSDF 362
           KL+SIDCK+F+FG G CPFG+SCFYKHAY DG LEEV+LRHL + +G TVI  +IRLS+F
Sbjct: 257 KLRSIDCKHFNFGNGNCPFGASCFYKHAYSDGHLEEVVLRHLGSQEGETVITDSIRLSEF 316

Query: 363 LSRLHL 368
           L  L +
Sbjct: 317 LGGLQI 322



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,960,297
Number of extensions: 391676
Number of successful extensions: 1523
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,364,969
Effective search space: 2241811692
Effective search space used: 2241811692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)