FiT-DB / Search/ Help/ Sample detail

Os06g0318600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S41A, C-terminal protease family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0362) R2 : 0.865
β1 : 1.62 (0.134) R2dD : 0.0452 R2D : 0.0244
β2 : 3.03 (0.16) R2dC : 0.325 R2C : 0.685
β3 : -1.74 (0.134) R2dE : 0.153 R2E : 0.493
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.141 (0.0776) R2dN8 : 0.00119 R2N8 : -0.00395
σ : 0.676
deviance : 210.38
__
_____
C
peak time of C : 7.97
E
wheather : temperature
threshold : 19.41
memory length : 257
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 9.65

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.66 0.677 11.9 1.59 2.94 -1.87 -1.57 -1.11 0.108 7.83 19.4 263 15.2 9.45
209.8 0.675 11.9 1.61 2.98 -1.83 -0.575 -- 0.132 7.88 19.45 265 15.1 9.49
210.49 0.676 11.9 1.6 3.02 -1.79 -- -0.161 0.138 7.91 19.4 261 15.1 9.65
210.38 0.676 11.9 1.62 3.03 -1.74 -- -- 0.141 7.97 19.41 257 15 9.65
331.35 0.848 12 1.89 -- -3.53 -- 0.166 0.399 -- 18.05 218 14.6 10.1
251.49 0.743 11.8 1.3 4.73 -- 0.518 -- 0.0427 8.59 -- -- -- --
252.35 0.744 11.8 1.32 4.73 -- -- -- 0.0424 8.58 -- -- -- --
321.43 0.835 12 1.88 -- -3.62 -- -- 0.146 -- 18.28 231 14.5 9.97
277.71 0.776 11.9 -- 3.05 -1.66 -- -- -0.00503 7.99 19.2 263 15 9.5
1511.88 1.82 12 1.34 -- -- -- -- 0.0855 -- -- -- -- --
298.26 0.808 11.9 -- 4.74 -- -- -- -0.105 8.56 -- -- -- --
322.38 0.836 12.1 -- -- -3.77 -- -- -0.418 -- 13.13 329 12.9 10.5
1558.97 1.84 12 -- -- -- -- -- -0.0627 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.21 wind 3.0 14400 > th dose independent rect. 2 1
2 208.43 wind 3.0 14400 < th dose independent rect. 2 1
3 209.65 humidity 80.0 14400 < th dose dependent rect. 4 3
11 210.95 humidity 80.0 14400 < th dose dependent rect. 22 9
14 211.20 humidity 80.0 14400 < th dose independent rect. 22 5
17 211.41 humidity 80.0 14400 < th dose independent rect. 22 8
24 211.76 humidity 80.0 14400 < th dose independent rect. 5 1
26 211.80 humidity 80.0 14400 < th dose independent rect. 1 2
27 211.80 humidity 80.0 14400 > th dose independent rect. 23 4
30 211.88 humidity 80.0 14400 > th dose independent rect. 5 1
31 211.89 humidity 80.0 14400 > th dose independent rect. 23 7
32 211.90 humidity 80.0 14400 < th dose dependent rect. 24 1
37 212.00 humidity 80.0 14400 < th dose dependent rect. 22 5
106 213.04 temperature 20.0 270 > th dose independent rect. 15 9
127 213.68 atmosphere 1000.0 270 > th dose dependent rect. 11 5
131 213.77 atmosphere 1000.0 270 > th dose independent rect. 10 7
145 214.16 atmosphere 995.0 270 > th dose dependent rect. 10 7
199 216.35 temperature 25.0 270 < th dose independent rect. 1 16
216 217.06 atmosphere 1000.0 10 > th dose dependent rect. 12 6
244 218.34 wind 1.0 43200 > th dose independent rect. 9 4
249 218.46 wind 1.0 43200 < th dose independent rect. 9 4
273 219.11 wind 1.0 43200 < th dose dependent rect. 9 3
275 219.14 wind 9.0 14400 < th dose independent rect. 13 2
311 220.26 temperature 25.0 720 < th dose independent rect. 9 6
321 220.44 humidity 80.0 1440 < th dose independent rect. 7 1
340 220.88 humidity 80.0 1440 > th dose independent rect. 7 1
344 220.98 wind 9.0 14400 > th dose dependent rect. 14 1
374 221.56 wind 1.0 43200 < th dose dependent rect. 10 1
382 221.67 atmosphere 1000.0 10 > th dose independent rect. 12 6
401 221.95 wind 9.0 14400 > th dose independent rect. 13 2
403 221.95 wind 5.0 14400 < th dose dependent rect. 1 2
409 222.05 wind 7.0 14400 > th dose dependent rect. 12 4
410 222.06 temperature 25.0 270 < th dose independent sin 3 NA
449 222.64 wind 3.0 14400 > th dose independent rect. 19 11
456 222.69 temperature 25.0 720 < th dose dependent rect. 11 3
460 222.73 humidity 80.0 1440 < th dose dependent rect. 7 1
468 222.89 temperature 25.0 720 < th dose independent rect. 11 2
479 222.96 precipitation 0.1 270 < th dose independent sin 17 NA
480 222.96 precipitation 0.1 270 < th dose dependent sin 17 NA
487 223.04 wind 3.0 720 > th dose independent rect. 10 1
509 223.27 wind 9.0 14400 < th dose independent rect. 5 10
529 223.39 humidity 60.0 270 > th dose independent rect. 16 18
532 223.42 wind 9.0 14400 < th dose independent rect. 7 8
533 223.42 wind 9.0 14400 < th dose independent rect. 2 13
574 223.77 wind 1.0 14400 > th dose dependent rect. 1 3
587 223.86 temperature 25.0 720 < th dose dependent rect. 10 6
588 223.87 temperature 10.0 270 > th dose dependent rect. 16 9
589 223.88 wind 3.0 14400 > th dose independent sin 10 NA
598 223.92 temperature 25.0 720 < th dose dependent rect. 12 1
616 224.05 radiation 1.0 1440 > th dose independent rect. 13 2
626 224.13 wind 3.0 14400 < th dose independent sin 10 NA
630 224.15 atmosphere 1015.0 270 < th dose independent rect. 15 10
638 224.20 wind 3.0 14400 > th dose independent rect. 24 14
640 224.22 temperature 10.0 90 > th dose dependent rect. 18 9
643 224.25 atmosphere 1015.0 270 < th dose independent rect. 17 17
654 224.35 wind 7.0 14400 > th dose dependent rect. 5 12
693 224.59 humidity 50.0 270 > th dose independent rect. 15 20
705 224.65 wind 3.0 14400 < th dose independent rect. 24 14
712 224.69 wind 7.0 43200 < th dose independent rect. 16 1
719 224.71 wind 9.0 14400 > th dose independent rect. 18 21
728 224.75 wind 7.0 43200 > th dose independent rect. 16 1
746 224.82 radiation 1.0 1440 > th dose independent rect. 11 4
760 224.87 radiation 40.0 270 < th dose independent rect. 10 6
785 224.99 precipitation 0.1 270 > th dose independent rect. 16 12
790 225.01 radiation 10.0 1440 > th dose independent rect. 11 1
793 225.02 wind 9.0 14400 > th dose independent rect. 10 5
801 225.03 wind 9.0 14400 > th dose dependent rect. 18 21
816 225.11 atmosphere 1000.0 90 > th dose independent rect. 3 15
818 225.11 wind 9.0 14400 < th dose independent rect. 18 21
829 225.16 wind 9.0 14400 > th dose independent rect. 6 9
838 225.19 radiation 1.0 1440 < th dose independent rect. 9 4
840 225.19 radiation 1.0 1440 < th dose dependent rect. 9 4
845 225.21 radiation 1.0 1440 < th dose independent rect. 13 2
848 225.21 radiation 1.0 1440 < th dose dependent rect. 13 2
851 225.22 radiation 1.0 1440 < th dose independent rect. 11 4
853 225.22 radiation 1.0 1440 < th dose dependent rect. 11 4
865 225.24 wind 7.0 14400 > th dose dependent rect. 24 17
866 225.25 wind 9.0 14400 > th dose independent rect. 20 19
888 225.36 wind 9.0 14400 > th dose independent rect. 13 5
891 225.36 temperature 10.0 270 > th dose dependent rect. 18 16
897 225.38 wind 7.0 14400 > th dose dependent sin 1 NA
902 225.39 precipitation 0.1 270 > th dose independent rect. 10 18
938 225.51 atmosphere 995.0 90 > th dose dependent rect. 3 15
946 225.54 wind 9.0 14400 < th dose independent sin 0 NA
961 225.57 wind 5.0 90 < th dose independent rect. 18 9
998 225.68 wind 9.0 14400 < th dose independent rect. 20 19