BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0318600 Os06g0318600|AK069141
         (468 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57680.1  | chr3:21381054-21383629 FORWARD LENGTH=520          616   e-177
AT4G17740.1  | chr4:9867088-9869719 REVERSE LENGTH=516            246   2e-65
AT5G46390.2  | chr5:18816612-18819148 FORWARD LENGTH=490          206   2e-53

>AT3G57680.1 | chr3:21381054-21383629 FORWARD LENGTH=520
          Length = 519

 Score =  616 bits (1589), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/421 (70%), Positives = 354/421 (84%), Gaps = 7/421 (1%)

Query: 51  TVAFPVSKAREVNRVQRTLVEAWGLIRETFVDPTFNHQDWDMRLQQTMVEMFPLKSEDAA 110
           T+AFPVS+AREV  VQRTLVEAWGLIRETFVDPTFNHQDWD +LQQTMVEMFPL+S DAA
Sbjct: 103 TIAFPVSRAREVTTVQRTLVEAWGLIRETFVDPTFNHQDWDFKLQQTMVEMFPLRSADAA 162

Query: 111 YGKISGMLSTLGDPFTKIISPKEYQSFRIGSDGSVQGVGVFINKEPSSGRLLVMDCIEGG 170
           YGK+  MLSTLGDPFT++I+PKEYQSFRIGSDG++QGVG+FIN EP +G L+VM C+EG 
Sbjct: 163 YGKLKAMLSTLGDPFTRLITPKEYQSFRIGSDGNLQGVGLFINSEPRTGHLVVMSCVEGS 222

Query: 171 PADRAGLHGGDELVEIDGKSVSGLDGEAAAQRLRGRVGT--TVKVKVLDGTENERNGRIR 228
           PADRAG+H G+ELVEI+G+ +  +D EAAAQ+LRGRVGT  T+K+K ++G+  +   R  
Sbjct: 223 PADRAGIHEGEELVEINGEKLDDVDSEAAAQKLRGRVGTFVTIKLKNVNGSGTDSGIR-- 280

Query: 229 QKEVQLSREVINLSPLSTAIISHRSDDGRECKTGYVRLAAFSQTAAAEMESAIKKMEDEG 288
             EV+L R+ I LSP+S+AII H + DGR  KTGYV+L AFSQTAA++ME+A+ +ME++ 
Sbjct: 281 --EVKLPRDYIKLSPISSAIIPHTTPDGRLAKTGYVKLTAFSQTAASDMENAVHEMENQD 338

Query: 289 VQSYILDLRNNPGGLVKAGLDVAQMWLDGNETLVNTVDREGNVLPINMARGHSLTHDPLV 348
           VQSYILDLRNNPGGLV+AGLDVAQ+WLDG+ETLV T+DREG   PINM  GH++THDPLV
Sbjct: 339 VQSYILDLRNNPGGLVRAGLDVAQLWLDGDETLVYTIDREGVTSPINMINGHAVTHDPLV 398

Query: 349 VLVNEGSASASEILAGALHDNGRAILVGHRTFGKGKIQSVTELDDGSALFITVAKYLSPA 408
           VLVNEGSASASEILAGALHDNGRAILVG+RTFGKGKIQS+TEL+DGSALF+TVAKYLSP+
Sbjct: 399 VLVNEGSASASEILAGALHDNGRAILVGNRTFGKGKIQSITELNDGSALFVTVAKYLSPS 458

Query: 409 LHEIDQVGIQPDIQCTPEML-SLPRAPSLKEDDKATNLEMDSCIMVAEQALEIEKSKGSA 467
           LHEIDQVGI PD+QCT  M+ SL      K +     LE DSC+MVAE  LE  +S G+A
Sbjct: 459 LHEIDQVGIAPDVQCTTGMIDSLTAEIVEKMNSSVPLLEADSCVMVAEHELEARRSNGTA 518

Query: 468 S 468
           S
Sbjct: 519 S 519



>AT4G17740.1 | chr4:9867088-9869719 REVERSE LENGTH=516
          Length = 515

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 211/359 (58%), Gaps = 19/359 (5%)

Query: 69  LVEAWGLIRETFVDPTFNHQDWDMRLQQTMVEMFPLKSEDAAYGKISGMLSTLGDPFTKI 128
            +EAW  I   ++D TFN Q W  R ++T +   P+ + +  Y  I  M++TL DPFT+ 
Sbjct: 134 FLEAWRTIDRAYIDKTFNGQSW-FRYRETALRNEPMNTREETYMAIKKMVATLDDPFTRF 192

Query: 129 ISPKEYQSFRIGSDGSVQGVGVFINKE-----PSSGRLLVMDCIEGGPADRAGLHGGDEL 183
           + P +++S R G+ G+V GVG+ I        P +G L+V+    GGPA+RAG+  GD +
Sbjct: 193 LEPGKFKSLRSGTQGAVTGVGLSIGYPTASDGPPAG-LVVISAAPGGPANRAGILPGDVI 251

Query: 184 VEIDGKSVSGLDGEAAAQRLRGRVGTTVKVKVLDGTENERNGRIRQKEVQLSREVINLSP 243
             ID  +   L    AAQ L+G  G+ V++ +  G E         + + L+RE ++++P
Sbjct: 252 QGIDNTTTETLTIYDAAQMLQGPEGSAVELAIRSGPET--------RLLTLTRERVSVNP 303

Query: 244 LSTAIISHRSDDGRECKTGYVRLAAFSQTAAAEMESAIKKMEDEGVQSYILDLRNNPGGL 303
           + + +           K GY++L  F+Q A++ +  AI+ +    V +++LDLR+N GG 
Sbjct: 304 VKSRLCELPGSGSNSPKIGYIKLTTFNQNASSAVREAIETLRGNNVNAFVLDLRDNSGGS 363

Query: 304 VKAGLDVAQMWLDGNETLVNTVDREGNVLPINMARGHSL--THDPLVVLVNEGSASASEI 361
              G+++A+ WLD    +V   D  G V  I    G +   T +PL VLVN+G+ASASEI
Sbjct: 364 FPEGIEIAKFWLDKG-VIVYICDSRG-VRDIYDTDGSNAIATSEPLAVLVNKGTASASEI 421

Query: 362 LAGALHDNGRAILVGHRTFGKGKIQSVTELDDGSALFITVAKYLSPALHEIDQVGIQPD 420
           LAGAL DN RA++ G  T+GKGKIQSV EL DGS L +TVA+Y +PA  +ID+VG+ PD
Sbjct: 422 LAGALKDNKRALVYGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIDKVGVTPD 480



>AT5G46390.2 | chr5:18816612-18819148 FORWARD LENGTH=490
          Length = 489

 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 211/362 (58%), Gaps = 22/362 (6%)

Query: 71  EAWGLIRETFVDP---TFNHQDWDMRLQQTMVEMFPLKSEDAAYGKISGMLSTLGDPFTK 127
           EAW ++   F+D    ++  + W  + Q+  +   P+KS   A+  I  ML++LGD +T+
Sbjct: 125 EAWEIVNGAFLDTRSHSWTPETW--QKQKDDILASPIKSRSKAHEVIKNMLASLGDQYTR 182

Query: 128 IISPKEYQSFRIGSDGSVQGVGVFINKEPSSG----RLLVMDCIEGGPADRAGLHGGDEL 183
            +SP E+      S   + G+G+ + +E S G    +L V+  +    AD AG+  GDE+
Sbjct: 183 FLSPDEFSRM---SKYDITGIGINL-REVSDGGGNVKLKVLGLVLDSAADIAGVKQGDEI 238

Query: 184 VEIDGKSVSGLDGEAAAQRLRGRVGTTVKVKVLDGTENERNGRIRQKEVQLSREVINLSP 243
           + ++G  VSG      +  L+G   T V +KV  G    + G ++  ++Q  R+V   +P
Sbjct: 239 LAVNGMDVSGKSSFEVSSLLQGPSKTFVVLKVKHG----KCGPVKSLKIQ--RQVNAQTP 292

Query: 244 LSTAIISHRSDDGRECKTGYVRLAAFSQTAAAEMESAIKKMEDEGVQSYILDLRNNPGGL 303
           +S  +   + D+G     GY+RL  F+  A  ++  A+K++ D+G   +++DLR+N GGL
Sbjct: 293 VSYRL--EKVDNGT-VSVGYIRLKEFNALARKDLVIAMKRLLDKGASYFVMDLRDNLGGL 349

Query: 304 VKAGLDVAQMWLDGNETLVNTVDREGNVLPINMARGHSLTHDPLVVLVNEGSASASEILA 363
           V+AG++ A+++LD  +T++ T  R+       ++    L   PL+V+VN  +ASASEI+A
Sbjct: 350 VQAGIETAKLFLDEGDTVIYTAGRDPEAQKTVVSDKKPLITAPLIVMVNNRTASASEIVA 409

Query: 364 GALHDNGRAILVGHRTFGKGKIQSVTELDDGSALFITVAKYLSPALHEIDQVGIQPDIQC 423
            ALHDN +A+LVG RT+GKG IQSV EL DGS + +T+ KY++P   +I+  GI+PD + 
Sbjct: 410 SALHDNCKAVLVGERTYGKGLIQSVYELRDGSGVVVTIGKYVTPNHMDINGGGIEPDFRN 469

Query: 424 TP 425
            P
Sbjct: 470 LP 471



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,037,806
Number of extensions: 378440
Number of successful extensions: 752
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 3
Length of query: 468
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 366
Effective length of database: 8,310,137
Effective search space: 3041510142
Effective search space used: 3041510142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)