Os06g0317400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycine rich family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0317400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Glycine rich family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 175.51 | 0.622 | 2.8 | -0.166 | 0.188 | -0.438 | 0.873 | 0.337 | -0.0709 | 16.5 | 89.56 | 137 | -- | -- |
| 175.9 | 0.618 | 2.8 | -0.199 | 0.19 | -0.441 | 1.11 | -- | -0.0737 | 16.1 | 89.01 | 131 | -- | -- |
| 176.81 | 0.619 | 2.8 | -0.129 | 0.185 | -0.405 | -- | 0.663 | -0.0868 | 17.3 | 88 | 138 | -- | -- |
| 179.07 | 0.623 | 2.8 | -0.169 | 0.191 | -0.391 | -- | -- | -0.0873 | 17.5 | 88.64 | 142 | -- | -- |
| 178.03 | 0.621 | 2.8 | -0.122 | -- | -0.331 | -- | 0.662 | -0.0868 | -- | 89.05 | 136 | -- | -- |
| 184.88 | 0.637 | 2.81 | -0.145 | 0.138 | -- | -0.824 | -- | -0.16 | 3.43 | -- | -- | -- | -- |
| 186.84 | 0.64 | 2.81 | -0.13 | 0.14 | -- | -- | -- | -0.155 | 1.87 | -- | -- | -- | -- |
| 180.38 | 0.626 | 2.8 | -0.168 | -- | -0.319 | -- | -- | -0.0932 | -- | 89 | 136 | -- | -- |
| 179.93 | 0.625 | 2.8 | -- | 0.192 | -0.387 | -- | -- | -0.0667 | 17.4 | 89 | 137 | -- | -- |
| 188.02 | 0.641 | 2.81 | -0.124 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 187.28 | 0.64 | 2.81 | -- | 0.137 | -- | -- | -- | -0.14 | 1.85 | -- | -- | -- | -- |
| 181.18 | 0.627 | 2.79 | -- | -- | -0.307 | -- | -- | -0.0785 | -- | 89.07 | 136 | -- | -- |
| 188.42 | 0.641 | 2.81 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.51 | temperature | 25.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 3 | 167.76 | temperature | 15.0 | 10 | > th | dose independent | rect. | 6 | 23 |
| 5 | 169.99 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 6 | 170.21 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 9 | 170.88 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 16 | 170.94 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 25 | 171.31 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 27 | 171.34 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 33 | 171.50 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 46 | 171.80 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 48 | 171.86 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 51 | 171.93 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 54 | 172.11 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 60 | 172.29 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 62 | 172.31 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 65 | 172.37 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 1 |
| 66 | 172.37 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 67 | 172.38 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 69 | 172.40 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 23 |
| 71 | 172.40 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 84 | 172.61 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 86 | 172.61 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 87 | 172.61 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 125 | 173.02 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 20 |
| 129 | 173.07 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 23 |
| 145 | 173.10 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 152 | 173.14 | radiation | 1.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 158 | 173.21 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 163 | 173.27 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 205 | 173.71 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 243 | 173.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 252 | 174.14 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 267 | 174.32 | wind | 9.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 274 | 174.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 277 | 174.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 281 | 174.41 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 286 | 174.41 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 287 | 174.41 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 288 | 174.41 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 292 | 174.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 297 | 174.42 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 22 |
| 324 | 174.71 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 20 |
| 331 | 174.77 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 20 | 10 |
| 336 | 174.86 | radiation | 30.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 358 | 174.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 360 | 174.91 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 367 | 174.99 | temperature | 15.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 369 | 175.01 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 23 |
| 376 | 175.07 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 397 | 175.19 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 432 | 175.38 | radiation | 1.0 | 10 | > th | dose independent | rect. | 13 | 17 |
| 441 | 175.45 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 17 |
| 461 | 175.56 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 464 | 175.57 | humidity | 90.0 | 90 | < th | dose independent | rect. | 18 | 21 |
| 466 | 175.57 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 478 | 175.63 | humidity | 90.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 495 | 175.66 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 563 | 175.88 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 612 | 175.99 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 636 | 176.05 | humidity | 90.0 | 90 | < th | dose independent | sin | 8 | NA |
| 646 | 176.07 | humidity | 80.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 652 | 176.10 | wind | 1.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 657 | 176.10 | wind | 1.0 | 10 | < th | dose independent | rect. | 15 | 7 |
| 658 | 176.10 | humidity | 90.0 | 90 | > th | dose independent | rect. | 14 | 17 |
| 659 | 176.10 | wind | 1.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 690 | 176.16 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 713 | 176.23 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 718 | 176.24 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 738 | 176.30 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 762 | 176.32 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 23 |
| 776 | 176.36 | wind | 7.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 822 | 176.44 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 831 | 176.47 | wind | 1.0 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 856 | 176.52 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 881 | 176.54 | humidity | 90.0 | 90 | < th | dose independent | no | NA | NA |
| 917 | 176.59 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 17 | 11 |
| 926 | 176.61 | radiation | 1.0 | 10 | > th | dose independent | sin | 13 | NA |
| 927 | 176.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 2 |
| 939 | 176.65 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 11 |
| 981 | 176.72 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 2 |
| 987 | 176.73 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 996 | 176.75 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 1 |
| 999 | 176.75 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 13 | 1 |