Os06g0309400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0309400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 273.52 | 0.777 | 3.59 | -0.166 | 0.306 | 1.2 | -0.313 | -1.05 | 0.364 | 10.7 | 25.7 | 3982 | -- | -- |
| 275.69 | 0.773 | 3.61 | -0.27 | 0.348 | 1.23 | -0.192 | -- | 0.372 | 10.9 | 25.6 | 3965 | -- | -- |
| 273.88 | 0.771 | 3.59 | -0.151 | 0.312 | 1.21 | -- | -1.16 | 0.368 | 10.3 | 25.7 | 3995 | -- | -- |
| 275.02 | 0.772 | 3.64 | -0.411 | 0.332 | 1.15 | -- | -- | 0.278 | 10.7 | 25.64 | 3975 | -- | -- |
| 279.38 | 0.778 | 3.59 | -0.144 | -- | 1.28 | -- | -1.07 | 0.389 | -- | 25.7 | 3837 | -- | -- |
| 308.91 | 0.824 | 3.68 | -0.864 | 0.446 | -- | -0.337 | -- | 0.0667 | 11.2 | -- | -- | -- | -- |
| 309.38 | 0.824 | 3.68 | -0.878 | 0.449 | -- | -- | -- | 0.0651 | 11 | -- | -- | -- | -- |
| 280.23 | 0.78 | 3.64 | -0.424 | -- | 1.22 | -- | -- | 0.301 | -- | 25.6 | 3809 | -- | -- |
| 279.93 | 0.779 | 3.61 | -- | 0.344 | 1.3 | -- | -- | 0.34 | 10.5 | 25.6 | 4114 | -- | -- |
| 321.91 | 0.838 | 3.69 | -0.888 | -- | -- | -- | -- | 0.0617 | -- | -- | -- | -- | -- |
| 329.69 | 0.849 | 3.65 | -- | 0.457 | -- | -- | -- | 0.163 | 11.1 | -- | -- | -- | -- |
| 285 | 0.786 | 3.61 | -- | -- | 1.37 | -- | -- | 0.399 | -- | 25.31 | 3810 | -- | -- |
| 342.71 | 0.864 | 3.67 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 2 | 268.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 5 | 268.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 7 | 269.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 32 | 269.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 34 | 269.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 41 | 270.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 14 |
| 53 | 270.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 74 | 271.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 102 | 271.44 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 114 | 271.64 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 128 | 272.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 134 | 272.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 143 | 272.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 244 | 273.23 | temperature | 25 | 1440 | < th | dose independent | sin | 8 | NA |
| 268 | 273.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 277 | 273.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 286 | 273.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 15 |
| 289 | 273.56 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 375 | 274.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 441 | 274.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 22 |
| 452 | 274.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 474 | 274.89 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 543 | 275.25 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 18 |
| 565 | 275.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 641 | 275.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 649 | 275.74 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 651 | 275.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 654 | 275.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 664 | 275.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 689 | 275.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 691 | 275.84 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 708 | 275.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 714 | 275.90 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 716 | 275.91 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 719 | 275.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 728 | 275.94 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 732 | 275.96 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 752 | 276.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 782 | 276.08 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 801 | 276.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 812 | 276.15 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 849 | 276.23 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 19 |
| 857 | 276.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 969 | 276.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |