BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0309400 Os06g0309400|Os06g0309400
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15570.1 | chr4:8893043-8898858 FORWARD LENGTH=819 192 2e-49
AT1G16800.1 | chr1:5745523-5755263 REVERSE LENGTH=2128 63 2e-10
>AT4G15570.1 | chr4:8893043-8898858 FORWARD LENGTH=819
Length = 818
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 160/273 (58%), Gaps = 21/273 (7%)
Query: 26 TMDRFHKIVLSWDYVRLVADS--KGGQQQAKGLGRVKNTYASVAEYLAVFEPLLFEEVKA 83
++ RF+ I+L WDY +L ++ K + + L VKNTY V +Y FEPLLFEEVKA
Sbjct: 15 SVTRFYNIILGWDYKQLTKENERKNRKDSKEKLNVVKNTYKDVDDYFETFEPLLFEEVKA 74
Query: 84 QIVQGRSDEEEEAGQDWQKGIVASCTESEGFHKVSMAVLDDFREMVSENDLLLLSKEKFE 143
QI+Q + EE + +V C E EGFH + + + E +++NDLLLLSKE+ +
Sbjct: 75 QILQNKDGEEASV---CKMRLVMECNEGEGFHFLLVTYEHEEDEYLAQNDLLLLSKEEVK 131
Query: 144 EGVTPSAYAFALVEQRGGRETISLRTFVAGEIKNLNVAKPVSCSRLQRIASIFSTTESFL 203
PS+Y FA+VE R + LR ++A +I + + K SR + S S +
Sbjct: 132 GNSFPSSYGFAVVEHRQNN-LLRLRMYLAEDI--VQITKNTKSSRTKSFIQALSNMRSLI 188
Query: 204 -----------WILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRAWNV 252
+ LK+C LSTI+RE+ + SV+SLPFKDLI +A+EK+ G D+ AW +
Sbjct: 189 TSSASPIDKRVFSLKLCGLSTIIREYIALRSVSSLPFKDLIFTAAEKSCGFGDE--AWKI 246
Query: 253 PEPLMDYLKTNLNDSQLDAVNAGLSRRSFVLIQ 285
PL ++ NLN SQ +A++ GLSR+SFVLIQ
Sbjct: 247 SGPLNEFFNENLNKSQKEAIDVGLSRKSFVLIQ 279
>AT1G16800.1 | chr1:5745523-5755263 REVERSE LENGTH=2128
Length = 2127
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 126/267 (47%), Gaps = 37/267 (13%)
Query: 28 DRFHKIVLSWDYVRLVADSKGGQQQAKGLGRVKNT---YASVAEYLAVFEPLLFEEVKAQ 84
D F KI L DY +V + + +++ +G+ + + S +Y+ +F+PL+ EE KAQ
Sbjct: 1056 DWFRKI-LQMDYYAIVGLASTKKDESQNVGKFREVPVRFGSPEQYIQIFQPLVLEEFKAQ 1114
Query: 85 IVQGRSDEEEEAGQDWQKGIVA--SCTESEGFHKVSMAVLDD---FREMVSENDLLLLSK 139
+ S +E + ++ G+++ S + FH V ++ + SENDL+L +K
Sbjct: 1115 LQS--SFQEISSLEEIYYGVISVLSIERVDDFHFVRFMQDENDGSNSKSFSENDLVLFTK 1172
Query: 140 EKFEEGVTPSAYAFALVEQRGGRE--------TISLRTFVAGEIKNLNVAKPVSCSRLQR 191
E E S ++ + GRE +++R ++ LN A+ R Q
Sbjct: 1173 EHPEN----SNVGVNMMGKVEGREWDDKKRTSILNVRLYLQNASSRLNQARRNLLERSQW 1228
Query: 192 IASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGGNDQNRA-- 249
AS +I ++++ +REF + + +P LILS ++ ++ R+
Sbjct: 1229 HAS------------RILNITSQIREFQALSCIKDIPVLPLILSPMNDSNYDSEVKRSDL 1276
Query: 250 WNVPEPLMDYLKTNLNDSQLDAVNAGL 276
++P L LK++ N+SQL A++ +
Sbjct: 1277 RSLPHSLQQILKSSFNESQLQAISVAI 1303
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,690,048
Number of extensions: 228976
Number of successful extensions: 659
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)