Os06g0301100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0301100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.01 | 0.225 | 11 | -1.72 | 0.392 | -57.6 | -0.92 | -117 | 0.188 | 20.3 | 15.01 | 5129 | -- | -- |
| 29.1 | 0.253 | 11.8 | 0.177 | 0.411 | -1.41 | -1.05 | -- | 0.253 | 20.6 | 15.01 | 5129 | -- | -- |
| 25.59 | 0.236 | 11 | -1.7 | 0.386 | -57.5 | -- | -116 | 0.188 | 20.7 | 15.01 | 5108 | -- | -- |
| 25.36 | 0.235 | 11.8 | -0.0553 | 0.397 | -1.33 | -- | -- | 0.186 | 20.6 | 16.18 | 6313 | -- | -- |
| 34.22 | 0.272 | 11 | -1.69 | -- | -57.4 | -- | -116 | 0.181 | -- | 15 | 5106 | -- | -- |
| 32.87 | 0.269 | 11.8 | 0.236 | 0.397 | -- | -0.941 | -- | 0.268 | 20.4 | -- | -- | -- | -- |
| 35.58 | 0.279 | 11.8 | 0.264 | 0.396 | -- | -- | -- | 0.267 | 20.7 | -- | -- | -- | -- |
| 33.75 | 0.271 | 11.8 | -0.0702 | -- | -1.41 | -- | -- | 0.172 | -- | 16.02 | 6375 | -- | -- |
| 25.42 | 0.235 | 11.8 | -- | 0.392 | -1.36 | -- | -- | 0.19 | 20.6 | 15.89 | 6257 | -- | -- |
| 44.45 | 0.312 | 11.8 | 0.263 | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
| 37.41 | 0.286 | 11.8 | -- | 0.396 | -- | -- | -- | 0.237 | 20.7 | -- | -- | -- | -- |
| 33.86 | 0.271 | 11.8 | -- | -- | -1.4 | -- | -- | 0.185 | -- | 15.84 | 6360 | -- | -- |
| 46.26 | 0.317 | 11.8 | -- | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.95 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 13 | 23.06 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 37 | 23.18 | humidity | 90 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 39 | 23.19 | humidity | 50 | 43200 | < th | dose dependent | sin | 9 | NA |
| 41 | 23.20 | temperature | 15 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 44 | 23.22 | humidity | 90 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 53 | 23.28 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 2 |
| 62 | 23.31 | radiation | 20 | 4320 | < th | dose independent | rect. | 20 | 10 |
| 72 | 23.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 74 | 23.32 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 87 | 23.35 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 90 | 23.35 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 14 |
| 98 | 23.35 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 20 |
| 108 | 23.37 | temperature | 15 | 4320 | < th | dose dependent | rect. | 22 | 6 |
| 120 | 23.38 | temperature | 15 | 4320 | < th | dose dependent | sin | 10 | NA |
| 135 | 23.40 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 155 | 23.40 | temperature | 15 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 165 | 23.41 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 215 | 23.44 | humidity | 90 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 216 | 23.44 | humidity | 90 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 230 | 23.45 | temperature | 15 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 233 | 23.45 | temperature | 15 | 4320 | < th | dose dependent | sin | 1 | NA |
| 304 | 23.48 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 321 | 23.49 | temperature | 15 | 4320 | < th | dose dependent | rect. | 3 | 17 |
| 359 | 23.52 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 360 | 23.52 | temperature | 15 | 4320 | < th | dose dependent | no | NA | NA |
| 365 | 23.52 | temperature | 15 | 4320 | < th | dose dependent | rect. | 10 | 21 |
| 397 | 23.53 | temperature | 15 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 400 | 23.54 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 5 |
| 416 | 23.55 | temperature | 15 | 4320 | < th | dose independent | sin | 7 | NA |
| 417 | 23.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 475 | 23.58 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 476 | 23.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 484 | 23.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 500 | 23.59 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 593 | 23.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 605 | 23.65 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 629 | 23.66 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 675 | 23.68 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 8 |
| 681 | 23.68 | temperature | 15 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 682 | 23.68 | temperature | 15 | 4320 | > th | dose independent | rect. | 24 | 13 |
| 690 | 23.69 | temperature | 15 | 4320 | > th | dose independent | sin | 6 | NA |
| 702 | 23.69 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 790 | 23.72 | temperature | 15 | 4320 | < th | dose dependent | rect. | 5 | 10 |
| 844 | 23.75 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 939 | 23.78 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 978 | 23.79 | temperature | 15 | 4320 | > th | dose independent | rect. | 17 | 20 |