BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0301100 Os06g0301100|J065191D09
(123 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G57280.1 | chr3:21193960-21195547 FORWARD LENGTH=227 117 1e-27
AT1G50740.1 | chr1:18807861-18808765 FORWARD LENGTH=120 58 1e-09
AT3G20510.1 | chr3:7160884-7161991 FORWARD LENGTH=120 51 2e-07
>AT3G57280.1 | chr3:21193960-21195547 FORWARD LENGTH=227
Length = 226
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 73/107 (68%)
Query: 11 GGILFSMGLVGFLFWRSTVSLTFGVAPGLAILALGVLSLKVWRSGKSSLPFILXXXXXXX 70
GG++ S GL+GF F R+ SL+ GV G +LAL LSLK+WR GKSS P+IL
Sbjct: 110 GGLVVSGGLLGFAFSRNLTSLSTGVLYGGGLLALSTLSLKIWREGKSSFPYILGQAVLSA 169
Query: 71 XXXWKHFQAYTTTKKLLPWAFYTALSAAMICFYSYVLLAGGNPPPKK 117
WK+F AY+ TKKL P + +SA M+CFYSYV+L+GGNPPPKK
Sbjct: 170 VVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSYVVLSGGNPPPKK 216
>AT1G50740.1 | chr1:18807861-18808765 FORWARD LENGTH=120
Length = 119
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 11 GGILFSMGLVGFLFWRSTVSLTFGVAPGLAILALGVLSLKVWRSGKSSLPFILXXXXXXX 70
G +L G +G+L S SL G GL ++ G +SLK + K+SL L
Sbjct: 11 GILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLLATLLETVIAA 70
Query: 71 XXXWKHFQAYTTTKKLLPWAFYTALSAAMICFYSYVLLAGGNP-PPKKK 118
+ Q + T+K++P A +SA M CFY Y + GGN PPK +
Sbjct: 71 ALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGNHIPPKAE 119
>AT3G20510.1 | chr3:7160884-7161991 FORWARD LENGTH=120
Length = 119
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%)
Query: 11 GGILFSMGLVGFLFWRSTVSLTFGVAPGLAILALGVLSLKVWRSGKSSLPFILXXXXXXX 70
G +L G +G++ S S G GL ++ G +SLK + K+S ++
Sbjct: 11 GMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTIAMVLQTVIAA 70
Query: 71 XXXWKHFQAYTTTKKLLPWAFYTALSAAMICFYSYVLLAGGNPPPKK 117
Q Y T K++P +SA M CFY Y + GGN P K
Sbjct: 71 ALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAK 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,541,026
Number of extensions: 77362
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 3
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)